🏗️ Statistical models for biomolecular dynamics 🏗️
🚂 Python API for Emma's Markov Model Algorithms 🚂
MD pharmacophores and virtual screening
A pocket volume analyzer for use in protein modeling.
Dynamic pharmacophore modeling of molecular interactions
PyRod - Tracing water molecules in molecular dynamics simulations
gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
Detect and characterize binding pockets from molecular simulations.
Biomolecular simulation trajectory/data analysis.
Python interface of cpptraj
Powerful, efficient particle trajectory analysis in scientific Python.
An open library for the analysis of molecular dynamics trajectories
MDAnalysis is a Python library to analyze molecular dynamics simulations.
A Python Package for Protein Dynamics Analysis
HTMD: Programming Environment for Molecular Discovery
Development version of plumed 2
Cryptic binding pocket discovery from conformational ensembles. Open-source, reproducible, size-robust benchmarks against fpocket, PocketMiner and CryptoBench.
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