bedtools - the swiss army knife for genome arithmetic
A Python Package for Protein Dynamics Analysis
Protein and nucleic acid validation service
A pocket volume analyzer for use in protein modeling.
Python implementation of the multistate Bennett acceptance ratio (MBAR)
Experiments with expanded ensembles to explore chemical space
macromolecular crystallography library and utilities
IQ-TREE software version 2: phylogenetics by maximum likelihood
The Open Free Energy toolkit
Dynamic pharmacophore modeling of molecular interactions
A comprehensive library for computational molecular biology
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
A batteries-included toolkit for the GPU-accelerated OpenMM molecular simulation engine.
Biomolecular simulation trajectory/data analysis.
Computational Crystallography Toolbox
Python interface of cpptraj
Powerful, efficient particle trajectory analysis in scientific Python.
Identification of Protein-Ligand Binding Sites using dipolar EPR data
🏗️ Statistical models for biomolecular dynamics 🏗️
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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