🤝 Tool for mining KEGG pathways completeness data from eggNOG-mapper annotations
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Aug 30, 2026 - Python
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eggnog-mapper
Here are 7 public repositories matching this topic...
Extraction of COG functional classes and save the data in csv format
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Jul 18, 2018 - Shell
A genomic toolkit for sliding-window GC content/skew circular mapping, XLSX-to-FASTA protein extraction, and EggNOG-mapper results parsing for functional category distribution. Provides automated, high-resolution visualization for bacterial genomes. Post-analysis for Genomics NGS Analysis Team 新北市汐止區新台五路 (Taiwan © 2017-2018 Genomics)
python bioinformatics genomics data-visualization scientific-computing eggnog-mapper genome-visualization bacterial-genomics circular-genome-map cog-categories
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Feb 10, 2026 - Python
Scripts created for my final degree project in the Biotechnology Grade at the Technical University of Madrid (UPM) during the 2022/23 course..
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Jul 3, 2023
Annotate the ruff sandpiper (Calidris pugnax) reference proteome with GO, KEGG, PFAM and other information using various bioinformatics tools and databases.
gene-ontology kegg ncbi-blast functional-annotation pfam evolutionary-biology bioinformatics-tool interproscan eggnog-mapper
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Dec 9, 2025 - R
The PanKEGG Flask application is a web-based tool for visualizing, comparing, and exporting metagenomic data related to taxonomy and pathways.
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May 30, 2024 - HTML
Orthologs Databases — Archive of bioinformatics databases and PHP processing pipelines for cross-species ortholog analysis across 7 model organisms (2012-2016). Integrates data from 21 sources including HomoloGene, InParanoid, OrthoMCL, eggNOG, BioGRID, STRING, Gene Ontology, KEGG, and Reactome.
php string databases biogrid biomart homologene flybase geneontology orthomcl kegg-ortholog orthologs orthology homology eggnog mitocheck inparanoid eggnog-mapper pombase signalink
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Mar 15, 2026 - PHP
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