bakta

BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons 🦠

Reusable comparative bacterial genomics pipeline for assembled bacterial genome FASTA files using QUAST, Bakta, FastANI, Panaroo, and FastTree.

Python CLI tool & package. An LLM-guided Post-Annotation Synthesizer that turns complex prokaryotic genome annotations into human-readable summaries & machine-readable JSON.

Pipeline bioinformático modular para ensamblaje, evaluación y anotación de genomas bacterianos mediante herramientas reproducibles basadas en Conda.

AI-assisted pipeline for mining candidate Staphylococcus invasome and virulence-associated genes from assembled genome FASTA files.

Reusable bacterial genome mining pipeline for assembled genome FASTA files using QUAST, Bakta, antiSMASH, GECCO, and combined BGC summary reporting.

Bakteriyofaj genom gorsellestirmesi icin R/Python kodlari (Bakta GFF3'ten dairesel genom haritasi)

A tool to take annotation files from bakta or prokka and produce a human readable report.

Bakta and Prokka call the same 87,859 CDS regions in 25 complete bacterial genomes, then give 51.7% of them different product names. Both wrap Prodigal, so they agree on gene boundaries and diverge on function. Grouped-by-genome ML shows the disagreement tracks database coverage, not sequence.

Condense and summarize many results form BAKTA into CSV for statistics

Minimal pixi proof-of-concept for biologists — Prokka, Bakta and Snakemake in four isolated environments