bacterial-assembly

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kevincasal / bioinfo_pipelines

Pipeline bioinformático modular para ensamblaje, evaluación y anotación de genomas bacterianos mediante herramientas reproducibles basadas en Conda.

bash bioinformatics genomics conda bioinformatics-pipeline genome-annotation genome-assembly masurca busco quast bacterial-genome-analysis bacterial-genomics bakta bacterial-assembly

Updated Aug 11, 2026
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pavelnovitsky / Bio-Gen

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Bio-Gen: An automated, containerized pipeline for bacterial genome assembly and annotation. Built on Ubuntu 24.04, it integrates fastp, SPAdes, Pilon, and Prokka to transform raw reads into polished GenBank files and MultiQC reports with a single command.

bioinformatics pipeline genomics bioinformatics-pipeline microbiology spades prokka bacterial-assembly

Updated Mar 29, 2026
Shell

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