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MAT discovery: Taphrinomycotina, Allomyces and unsearched-lineage probes #353

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774157e
Note: MAT discovery strategy and Taphrinomycotina detector probe
hyphaltip Nov 14, 2026
a45bbc1
Note: correct genome counts in the Taphrinomycotina table
hyphaltip Nov 14, 2026
0382117
Allomyces flank-first idiomorph probe, unsearched-lineage survey and …
hyphaltip Nov 14, 2026
5f6502c
Note: fix escaped backticks
hyphaltip Nov 14, 2026
4edf4a0
Taphrinomycotina PM leads: Pfam and gene-order follow-up, rescan of 1…
hyphaltip Nov 14, 2026
3e6279f
Note: retract PM leads statement where it was made
hyphaltip Nov 14, 2026
f1bf9da
Taphrinomycotina matPi search with positive control, lead follow-up i…
hyphaltip Nov 14, 2026
f486399
Scan genomes outside the first surveys: 3 annotated, 4 with Augustus …
hyphaltip Nov 14, 2026
aeda7f2
Note: correct genome counts of the unscanned set and the candidate-co…
hyphaltip Nov 14, 2026
c13e9f9
Note: correct Synchytrium and Globomyces assembly details
hyphaltip Nov 14, 2026
655d980
Coverage recount by locus tag, Augustus scans of 7 more assemblies, G…
hyphaltip Nov 14, 2026
0b18f25
Note: correct the Microsporidia count in the unscanned set
hyphaltip Nov 14, 2026
8085d32
Note: why the last 50 genomes cannot be scanned
hyphaltip Nov 14, 2026
dc70112
Taphrinomycotina: genome-level matPi search finds an HMG + homeodomai…
hyphaltip Nov 14, 2026
c84ea42
Note: correct genome counts and the T. communis region check in the m…
hyphaltip Nov 14, 2026
162ded2
Taphrinomycotina: gene models and cross-genome orthology of the HMG +…
hyphaltip Nov 14, 2026
f114bb7
Note: correct comparison counts in the orthology section
hyphaltip Nov 14, 2026
6e13b7e
Taphrinomycotina: RNA-seq shows the HMG and homeodomain genes of the …
hyphaltip Nov 14, 2026
48b30cf
Taphrinomycotina: StringTie transcript assembly at the HMG + homeodom…
hyphaltip Nov 14, 2026
981414e
Note: trace the curated T. deformans matPi to a translated tblastn re…
hyphaltip Nov 14, 2026
63e0d53
Taphrinomycotina: infer library strandedness; the homeodomain gene of…
hyphaltip Nov 14, 2026
6f84fbc
Annotation-free tblastn search of 48 fragmentary assemblies: no HMG +…
hyphaltip Nov 15, 2026
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268 changes: 268 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-strategy-taphrinomycotina.md
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4 changes: 4 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/adjacent_pair_null_aug2.tsv
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lineage pair_type genomes observed_genomes expected_mean expected_max p share_same_strand
Aug2_3genomes HMG+Homeo 3 0 0.1 1 1.0000 NA
Aug2_3genomes 2xHomeo 3 1 0.0 1 0.0299 0.0
Aug2_3genomes 2xHMG 3 2 0.2 2 0.0080 0.333
4 changes: 4 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/adjacent_pair_null_aug3.tsv
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lineage pair_type genomes observed_genomes expected_mean expected_max p share_same_strand
Aug3_4genomes HMG+Homeo 4 0 0.0 0 1.0000 NA
Aug3_4genomes 2xHomeo 4 0 0.0 1 1.0000 NA
Aug3_4genomes 2xHMG 4 0 0.0 0 1.0000 NA
19 changes: 19 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/allomyces_baseline.tsv
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genome_A genome_B class genes
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 conserved 399
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 no_synteny 41
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 not_conserved 60
Allomyces_arbusculus_Burma_1F Allomyces_macrogynus_ATCC_38327 conserved 266
Allomyces_arbusculus_Burma_1F Allomyces_macrogynus_ATCC_38327 no_synteny 24
Allomyces_arbusculus_Burma_1F Allomyces_macrogynus_ATCC_38327 not_conserved 210
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F conserved 363
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F no_synteny 48
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F not_conserved 89
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 conserved 198
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 no_synteny 85
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 not_conserved 217
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F conserved 194
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F no_synteny 131
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F not_conserved 175
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 conserved 165
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 no_synteny 142
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 not_conserved 193
169 changes: 169 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/allomyces_probe.tsv
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24 changes: 24 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/allomyces_summary.tsv
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genome_A genome_B class genes
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 absent 3
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 conserved 17
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 no_synteny 1
Allomyces_arbusculus_Burma_1F Allomyces_javanicus_California_12 other_domain 1
Allomyces_arbusculus_Burma_1F Allomyces_macrogynus_ATCC_38327 absent 2
Allomyces_arbusculus_Burma_1F Allomyces_macrogynus_ATCC_38327 conserved 15
Allomyces_arbusculus_Burma_1F Allomyces_macrogynus_ATCC_38327 other_domain 5
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F absent 3
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F conserved 17
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F no_synteny 1
Allomyces_javanicus_California_12 Allomyces_arbusculus_Burma_1F other_domain 4
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 absent 1
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 conserved 12
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 no_synteny 4
Allomyces_javanicus_California_12 Allomyces_macrogynus_ATCC_38327 other_domain 8
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F absent 4
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F conserved 17
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F no_synteny 4
Allomyces_macrogynus_ATCC_38327 Allomyces_arbusculus_Burma_1F other_domain 12
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 absent 4
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 conserved 18
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 no_synteny 6
Allomyces_macrogynus_ATCC_38327 Allomyces_javanicus_California_12 other_domain 9
287 changes: 287 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/annotfree_regions.tsv
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49 changes: 49 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/annotfree_summary.tsv
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genome contigs bp hmg_regions hd_regions pairs contigs_with_pair longest_pair_contig_bp
Vairimorpha_sp._gmOTU17_SAN00002588|GCA_986194575.1_ilOchDupl1.microsporidian_1.1 12 467395 0 0 0 0 0
Metchnikovella_incurvata|GCA_003600395.1_ASM360039v1 422 4611157 0 0 0 0 0
Tubulinosema_ratisbonensis|GCA_004000155.1_ASM400015v1 781 7301063 0 2 0 0 0
Amoeboradix_gromovi|GCA_018985225.1_ASM1898522v1 549 4221620 0 0 0 0 0
Vairimorpha_ceranae_BRL01|GCF_000182985.1_ASM18298v1 639 4343874 0 3 0 0 0
Spraguea_lophii|GCA_011076965.1_ASM1107696v1 847 5510003 0 3 0 0 0
Spraguea_lophii|GCA_011074935.1_ASM1107493v1 851 5544380 0 3 0 0 0
Sanchytrium_tribonematis|GCA_018985235.1_ASM1898523v1 897 6251251 0 0 0 0 0
Spraguea_lophii|GCA_011076975.1_ASM1107697v1 864 5569531 0 2 0 0 0
Spraguea_lophii|GCA_011074965.1_ASM1107496v1 840 5393868 0 3 0 0 0
Spraguea_lophii|GCA_011074945.1_ASM1107494v1 844 5442871 0 3 0 0 0
Spraguea_lophii|GCA_011076955.1_ASM1107695v1 864 5502253 0 3 0 0 0
Spraguea_lophii|GCA_011074975.1_ASM1107497v1 863 5492815 0 3 0 0 0
Pseudoloma_neurophilia|GCA_001432165.1_ASM143216v1 654 4254243 0 2 0 0 0
fungal_sp.|GCA_023347065.1_ASM2334706v1 386 2777346 0 0 0 0 0
Gigaspora_margarita|GCA_910592245.1_Gigaspora_margarita_120-4_pot_B_10_14 82485 477110750 169 5 0 0 0
Spraguea_lophii_42_110|GCA_000430065.1_Sprlop1.0 746 4271025 0 3 0 0 0
Microsporidia_sp._MB|GCA_050230985.1_KEMRI_ICIPE_ABN394 938 5163565 0 0 0 0 0
Microsporidia_sp._MB|GCA_049634765.1_KEMRI_ICIPE_Tes0708gam 1135 6052440 0 1 0 0 0
Microsporidia_sp._MB|GCA_032191455.1_ICIPE_MspMB_1.0 979 5119153 0 1 0 0 0
Siphonaria_sp._JEL0065|GCA_027596065.1_ASM2759606v1 681 3658752 0 0 0 0 0
Coemansia_sp._RSA_2524|GCA_027578135.1_UCR_CoemRSA2524_1.0 1593 8304496 6 1 0 0 0
Coemansia_sp._RSA_551|GCA_027577555.1_UCR_CoemRSA551_1.0 1625 8564016 2 0 0 0 0
Microsporidia_sp._MB|GCA_049634785.1_KEMRI_ICIPE_Tes094gam 1198 5703600 0 0 0 0 0
Coemansia_sp._RSA_921|GCA_027577315.1_UCR_CoemRSA921_1.0 1702 8528317 6 0 0 0 0
Hepatospora_eriocheir|GCA_002087875.1_ASM208787v1 691 3239267 0 3 0 0 0
Coemansia_sp._RSA_1287|GCA_027578735.1_UCR_CoemRSA1287_1.0 1347 6467358 6 0 0 0 0
Coemansia_aciculifera|GCA_027579955.1_UCR_CoacBCRC34181_1.0 1888 8968546 6 0 0 0 0
Coemansia_sp._RSA_475|GCA_027577635.1_UCR_CoemRSA475_1.0 1831 8821283 5 1 0 0 0
Coemansia_sp._RSA_530|GCA_027577795.1_UCR_CoemRSA530_1.0 1768 8120245 3 0 0 0 0
Coemansia_sp._RSA_1937|GCA_027578435.1_UCR_CoemRSA1937_1.0 1622 7474678 4 0 0 0 0
Coemansia_sp._RSA_788|GCA_027577475.1_UCR_CoemRSA788_1.0 1855 8355062 5 0 0 0 0
Nosema_rusticus|GCA_046563365.1_FR26_Nr_1 1452 6197048 0 0 0 0 0
Coemansia_sp._RSA_2052|GCA_027578455.1_UCR_CoemRSA2052_1.0 2097 8900158 8 0 0 0 0
Massospora_cicadina|GCA_006912075.1_UMICH_Mcic_1 144784 584366494 2 1 0 0 0
Coemansia_sp._RSA_1836|GCA_027578595.1_UCR_CoemRSA1836_1.0 1795 7263336 2 0 0 0 0
Coemansia_sp._RSA_1694|GCA_027578655.1_UCR_CoemRSA1694_1.0 2055 8354744 6 0 0 0 0
Dictyocoela_roeselum|GCA_016255985.1_ASM1625598v1 383 1398123 0 0 0 0 0
Coemansia_sp._RSA_25|GCA_027478835.1_UCR_CoemRSA25_1.0 1749 6626621 5 0 0 0 0
Areospora_rohanae|GCA_056822185.1_ASM5682218v1 1428 5284787 0 0 0 0 0
Anncaliia_algerae|GCA_000313815.1_ASM31381v1 2245 7547728 0 0 0 0 0
Alternosema_astaquatica|GCA_030386735.1_Fv_Alternosema1 319 1077699 0 0 0 0 0
Agmasoma_carcini_nom._nud.|GCA_029231695.1_Cm_Agmasoma_carcini_1 305 975333 0 2 0 0 0
Massospora_platypediae|GCA_006912095.1_Mplat_NP02_megahit 241057 750606274 2 1 0 0 0
Entomophthora_muscae|GCA_900018355.1_Em_KVL-14-118 2615 7761280 1 1 0 0 0
Hamiltosporidium_tvaerminnensis|GCA_000180835.1_ASM18083v1 278 720977 0 0 0 0 0
Neocallimastix_californiae|GCA_975848665.1_SNW_BASALT_bin1877_ASM_v1 101 254788 0 0 0 0 0
Chytridiomycetes_sp.|GCA_023347045.1_ASM2334704v1 279 707884 1 0 0 0 0
61 changes: 61 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/augustus_genomes_2_3_candidates.tsv
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Globomyces_pollinis-pini_Glopol1 g17 MU621090.1 16 rnhA 86630_cbs357-93_MAT_Minus|gene1|rnhA 1.04e-07
Globomyces_pollinis-pini_Glopol1 g281 MU621093.1 280 Homeodomain 1.2e-17
Globomyces_pollinis-pini_Glopol1 g286 MU621093.1 285 Homeodomain 3.5e-18
Globomyces_pollinis-pini_Glopol1 g321 MU621094.1 320 HMG_box 6.8e-13
Globomyces_pollinis-pini_Glopol1 g540 MU621097.1 539 choline AMM63120.1 5.55e-58
Globomyces_pollinis-pini_Glopol1 g829 MU621102.1 828 HMG_box 3.8e-11
Globomyces_pollinis-pini_Glopol1 g1449 MU621115.1 1448 HMG_box 8.9e-13
Globomyces_pollinis-pini_Glopol1 g1676 MU621120.1 1675 rnhA 29922_cbs109-16_MAT_Minus|gene2|rnhA 5.87e-33
Globomyces_pollinis-pini_Glopol1 g1874 MU621125.1 1873 Homeodomain 2.5e-19
Globomyces_pollinis-pini_Glopol1 g2478 MU621144.1 2477 HMG_box 5.4e-14 sexP 3108396_ai-2023a_MAT_Plus|gene2|sexP 8.82e-10
Globomyces_pollinis-pini_Glopol1 g2979 MU621161.1 2978 HMG_box 1e-12 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 1.4e-07
Globomyces_pollinis-pini_Glopol1 g3739 MU621191.1 3738 tptA 3108396_ai-2023a_MAT_Plus|gene1|tptA 8.09e-16
Globomyces_pollinis-pini_Glopol1 g3940 MU621201.1 3939 HMG_box 1.8e-14
Globomyces_pollinis-pini_Glopol1 g4421 MU621225.1 4420 HMG_box 1.6e-15
Globomyces_pollinis-pini_Glopol1 g4450 MU621227.1 4449 glrA 86630_cbs357-93_MAT_Minus|gene2|glrA 4.86e-115
Globomyces_pollinis-pini_Glopol1 g4511 MU621230.1 4510 HMG_box 9.8e-08
Globomyces_pollinis-pini_Glopol1 g4923 MU621256.1 4922 HMG_box 2e-13
Globomyces_pollinis-pini_Glopol1 g4928 MU621256.1 4927 HMG_box 1.7e-13
Globomyces_pollinis-pini_Glopol1 g5065 MU621265.1 5064 rnhA 3108396_ai-2023a_MAT_Plus|gene3|rnhA 5.53e-32
Globomyces_pollinis-pini_Glopol1 g5474 MU621297.1 5473 choline AMM63120.1 7.48e-64
Globomyces_pollinis-pini_Glopol1 g5476 MU621297.1 5475 choline AMM63120.1 4.32e-43
Globomyces_pollinis-pini_Glopol1 g5561 MU621304.1 5560 rnhA 86630_cbs357-93_MAT_Minus|gene1|rnhA 6.1e-26
Globomyces_pollinis-pini_Glopol1 g5896 MU621335.1 5895 rnhA 3108396_ai-2023a_MAT_Plus|gene3|rnhA 8.54e-27
Globomyces_pollinis-pini_Glopol1 g6538 MU621409.1 6537 HMG_box 9.8e-09
Globomyces_pollinis-pini_Glopol1 g6733 MU621435.1 6732 HMG_box 1.9e-10
Globomyces_pollinis-pini_Glopol1 g6855 MU621454.1 6854 HMG_box 5.3e-11 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 2.33e-07
Globomyces_pollinis-pini_Glopol1 g7055 MU621488.1 7054 HMG_box 1.1e-14
Globomyces_pollinis-pini_Glopol1 g7541 MU621598.1 7540 HMG_box 9.1e-11 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 4.06e-07
Globomyces_pollinis-pini_Glopol1 g7543 MU621598.1 7542 HMG_box 1e-09
Globomyces_pollinis-pini_Glopol1 g7544 MU621598.1 7543 HMG_box 7.2e-11 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 2.97e-07
Globomyces_sp_JEL0801_ASM2759588 g794 JADGIX010000014.1 793 Homeodomain 8.4e-18
Globomyces_sp_JEL0801_ASM2759588 g801 JADGIX010000014.1 800 Homeodomain 2.5e-18
Globomyces_sp_JEL0801_ASM2759588 g2165 JADGIX010000060.1 2164 HMG_box 2.6e-14
Globomyces_sp_JEL0801_ASM2759588 g2253 JADGIX010000063.1 2252 HMG_box 7.1e-13 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 1.4e-07
Globomyces_sp_JEL0801_ASM2759588 g2256 JADGIX010000063.1 2255 HMG_box 7.1e-13 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 1.4e-07
Globomyces_sp_JEL0801_ASM2759588 g2335 JADGIX010000067.1 2334 HMG_box 4.1e-14 sexP 3108396_ai-2023a_MAT_Plus|gene2|sexP 8.69e-10
Globomyces_sp_JEL0801_ASM2759588 g2515 JADGIX010000075.1 2514 rnhA 29922_cbs109-16_MAT_Minus|gene2|rnhA 5.83e-33
Globomyces_sp_JEL0801_ASM2759588 g2873 JADGIX010000094.1 2872 choline AMM63111.1 8.84e-60
Globomyces_sp_JEL0801_ASM2759588 g3757 JADGIX010000152.1 3756 rnhA 101119_atcc11807_MAT_Minus|gene1|rnhA 6.03e-31
Globomyces_sp_JEL0801_ASM2759588 g4138 JADGIX010000183.1 4137 rnhA 86630_cbs357-93_MAT_Minus|gene1|rnhA 3e-18
Globomyces_sp_JEL0801_ASM2759588 g4690 JADGIX010000243.1 4689 HMG_box 1.4e-10
Globomyces_sp_JEL0801_ASM2759588 g4706 JADGIX010000245.1 4705 HMG_box 1.1e-15
Globomyces_sp_JEL0801_ASM2759588 g5334 JADGIX010000364.1 5333 HMG_box 4.3e-11 sexM 4837_nrrl1555_MAT_Minus|gene1|sexM 9.06e-08
Globomyces_sp_JEL0801_ASM2759588 g5335 JADGIX010000364.1 5334 HMG_box 7.5e-10
Globomyces_sp_JEL0801_ASM2759588 g5364 JADGIX010000374.1 5363 HMG_box 1.6e-09
Globomyces_sp_JEL0801_ASM2759588 g5894 JADGIX010000741.1 5893 HMG_box 1.4e-13
Mitosporidium_daphniae_ASM5257605 g56 JBLVQJ010000001.1 55 Homeodomain 1.6e-15
Mitosporidium_daphniae_ASM5257605 g98 JBLVQJ010000001.1 97 Homeodomain 1.4e-16
Mitosporidium_daphniae_ASM5257605 g332 JBLVQJ010000001.1 331 glrA 3108396_ai-2023a_MAT_Plus|gene4|glrA 1.26e-83
Mitosporidium_daphniae_ASM5257605 g700 JBLVQJ010000002.1 699 Homeodomain 1.5e-20
Mitosporidium_daphniae_ASM5257605 g1043 JBLVQJ010000003.1 1042 rnhA 3108396_ai-2023a_MAT_Plus|gene3|rnhA 7.32e-30
Mitosporidium_daphniae_ASM5257605 g1911 JBLVQJ010000006.1 1910 rnhA 64495_cbs110-17_MAT_Minus|gene2|rnhA 9.19e-21
Mitosporidium_daphniae_ASM5257605 g2087 JBLVQJ010000007.1 2086 choline AMM63120.1 3.95e-42
Mitosporidium_daphniae_ASM5257605 g2138 JBLVQJ010000007.1 2137 Homeodomain 6.4e-08
Mitosporidium_daphniae_UGP1 g426 NW_013546154.1 425 choline AMM63120.1 3.95e-42
Mitosporidium_daphniae_UGP1 g474 NW_013546159.1 473 rnhA 64495_cbs110-17_MAT_Minus|gene2|rnhA 9.19e-21
Mitosporidium_daphniae_UGP1 g1733 NW_013546648.1 1732 rnhA 3108396_ai-2023a_MAT_Plus|gene3|rnhA 7.32e-30
Mitosporidium_daphniae_UGP1 g1879 NW_013546678.1 1878 Homeodomain 1.6e-15
Mitosporidium_daphniae_UGP1 g1927 NW_013546685.1 1926 Homeodomain 6.2e-08
Mitosporidium_daphniae_UGP1 g2014 NW_013546695.1 2013 glrA 3108396_ai-2023a_MAT_Plus|gene4|glrA 1.26e-83
Mitosporidium_daphniae_UGP1 g2158 NW_013546711.1 2157 Homeodomain 1.4e-16
45 changes: 45 additions & 0 deletions docs/notes/2026-11-14_mat-discovery-tables/augustus_genomes_candidates.tsv
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Amoeboaphelidium_protococcarum_FD95 g2494 JALECJ010000004.1 159 HMG_box 8.5e-12 sexM 4850_vkm-f-921_MAT_Minus|gene0|sexM 2.23e-11
Amoeboaphelidium_protococcarum_FD95 g2513 JALECJ010000004.1 178 glrA 86630_cbs357-93_MAT_Minus|gene2|glrA 1.98e-20
Amoeboaphelidium_protococcarum_FD95 g2515 JALECJ010000004.1 180 HMG_box 9.3e-08
Amoeboaphelidium_protococcarum_FD95 g2877 JALECJ010000004.1 542 rnhA 86630_cbs357-93_MAT_Minus|gene1|rnhA 3.52e-18
Amoeboaphelidium_protococcarum_FD95 g102 JALECJ010000006.1 758 HMG_box 8.5e-45
Amoeboaphelidium_protococcarum_FD95 g3333 JALECJ010000020.1 1029 glrA 3108396_ai-2023a_MAT_Plus|gene4|glrA 2.82e-11
Amoeboaphelidium_protococcarum_FD95 g3712 JALECJ010000020.1 1408 tptA 4837_nrrl1555_MAT_Minus|gene0|tptA 2.58e-07
Amoeboaphelidium_protococcarum_FD95 g2127 JALECJ010000254.1 2385 HMG_box 9.9e-08
Amoeboaphelidium_protococcarum_FD95 g733 JALECJ010000257.1 4169 choline AMM63120.1 1.27e-07
Amoeboaphelidium_protococcarum_FD95 g846 JALECJ010000257.1 4282 choline AMM63120.1 5.55e-24
Amoeboaphelidium_protococcarum_FD95 g1416 JALECJ010000257.1 4852 Homeodomain 8.6e-11
Amoeboaphelidium_protococcarum_X5 g83 JALDTO010000013.1 82 tptA 64495_cbs346-36_MAT_Plus|gene0|tptA 6.55e-07
Amoeboaphelidium_protococcarum_X5 g1379 JALDTO010000098.1 1378 HMG_box 9.4e-08
Amoeboaphelidium_protococcarum_X5 g1954 JALDTO010000142.1 1953 rnhA 86630_cbs357-93_MAT_Minus|gene1|rnhA 2.98e-19
Amoeboaphelidium_protococcarum_X5 g2558 JALDTO010000146.1 2557 HMG_box 6.1e-44
Amoeboaphelidium_protococcarum_X5 g3432 JALDTO010000155.1 3431 glrA 86630_cbs357-93_MAT_Minus|gene2|glrA 8.33e-24
Amoeboaphelidium_protococcarum_X5 g3658 JALDTO010000158.1 3657 HMG_box 1.8e-07
Amoeboaphelidium_protococcarum_X5 g3661 JALDTO010000158.1 3660 glrA 86630_cbs357-93_MAT_Minus|gene2|glrA 1.98e-20
Amoeboaphelidium_protococcarum_X5 g3686 JALDTO010000158.1 3685 HMG_box 4.3e-12 sexM 4850_vkm-f-921_MAT_Minus|gene0|sexM 3.77e-12
Amoeboaphelidium_protococcarum_X5 g4437 JALDTO010000181.1 4436 glrA 3108396_ai-2023a_MAT_Plus|gene4|glrA 4.25e-12
Amoeboaphelidium_protococcarum_X5 g4789 JALDTO010000192.1 4788 choline AMM63120.1 2.49e-24
Amoeboaphelidium_protococcarum_X5 g4877 JALDTO010000200.1 4876 glrA 101119_atcc11807_MAT_Plus|gene1|glrA 9.89e-48
Amoeboaphelidium_protococcarum_X5 g5240 JALDTO010000206.1 5239 Homeodomain 1.4e-16
Amoeboaphelidium_protococcarum_X5 g5317 JALDTO010000206.1 5316 rnhA 64495_cbs110-17_MAT_Minus|gene2|rnhA 2.12e-16
Amoeboaphelidium_protococcarum_X5 g6130 JALDTO010000213.1 6129 choline AMM63120.1 1.41e-13
Amoeboaphelidium_protococcarum_X5 g6238 JALDTO010000213.1 6237 choline AMM63120.1 2.49e-08
Amoeboaphelidium_protococcarum_X5 g8595 JALDTO010000266.1 8594 choline AMM63120.1 1.04e-07
Amoeboaphelidium_protococcarum_X5 g8857 JALDTO010000266.1 8856 HMG_box 2e-06
Rozella_allomycis_CSF55 g238 KE560505.1 237 HMG_box 1.9e-19
Rozella_allomycis_CSF55 g461 KE560636.1 460 HMG_box 1.8e-11
Rozella_allomycis_CSF55 g517 KE560662.1 516 Homeodomain 1e-09
Rozella_allomycis_CSF55 g564 KE560700.1 563 Homeodomain 1.6e-19
Rozella_allomycis_CSF55 g738 KE560785.1 737 Homeodomain 5.3e-18
Rozella_allomycis_CSF55 g1503 KE560959.1 1502 HMG_box 1.7e-06
Rozella_allomycis_CSF55 g1708 KE561019.1 1707 rnhA 64495_cbs110-17_MAT_Minus|gene2|rnhA 1.42e-14
Rozella_allomycis_CSF55 g1851 KE561045.1 1850 glrA 101119_atcc11807_MAT_Plus|gene1|glrA 1.87e-19
Rozella_allomycis_CSF55 g1945 KE561047.1 1944 rnhA 86630_cbs357-93_MAT_Minus|gene1|rnhA 9.68e-34
Rozella_allomycis_CSF55 g2116 KE561068.1 2115 Homeodomain 3.7e-12
Rozella_allomycis_CSF55 g2374 KE561117.1 2373 rnhA 64495_cbs110-17_MAT_Minus|gene2|rnhA 4.25e-66
Rozella_allomycis_CSF55 g2504 KE561139.1 2503 choline AMM63119.1 1.44e-77
Rozella_allomycis_CSF55 g2542 KE561145.1 2541 glrA 86630_cbs357-93_MAT_Minus|gene2|glrA 2.54e-123
Rozella_allomycis_CSF55 g2710 KE561167.1 2709 Homeodomain 4.2e-09
Rozella_allomycis_CSF55 g3485 KE561370.1 3484 HMG_box 6.7e-09
Synchytrium_endobioticum_18_T1 g492 LDOR01000072.1 491 HMG_box 4.4e-09
Synchytrium_endobioticum_18_T1 g730 LDOR01000148.1 729 HMG_box 2.4e-19
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