Jason Stajich Lab at UC Riverside

Pinned Loading

1. Phyling Phyling Public

   Phyling: phylogenetic inference from annotated genomes

   Python 34 4

2. AAFTF AAFTF Public

   Automatic Assembly For The Fungi

   Python 29 5

3. orthoSynAssign orthoSynAssign Public

   Assign orthologs within many-many groups with synteny

   Python 7 1

4. RelocaTE3 RelocaTE3 Public

   ReLocaTE code for identifying Transposons (TE) in genomes using re-sequencing data

   Python 3

5. nf_phyling nf_phyling Public

   Nextflow pipeline for multi-locus fungal phylogenomics: PHYling → PhyKIT → ModelTest-NG → IQ-TREE 3 → RAxML-NG

   Nextflow

6. nf_funannotate1 nf_funannotate1 Public

   Annotation strategy for Eukaryotic genomes with auto incorporation of public evidence

   Nextflow