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Batrachochytrium read depth, heterozygosity and parent-of-origin analysis - #352

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hyphaltip wants to merge 8 commits into

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Batrachochytrium read depth, heterozygosity and parent-of-origin analysis#352
hyphaltip wants to merge 8 commits into
mainfrom
bd-coverage

Commits on Nov 13, 2026
- Batrachochytrium depth and heterozygosity pipeline: per-isolate alignment, depth windows, SNP allele balance, summary
  
  hyphaltip
  and
  claude
  committed
  6bfc6a3
Commits on Nov 14, 2026
Commits on Nov 15, 2026
- Bd: depth-controlled genotypes at the divergent sites; the HET-rich isolates separate from both lineages at equal depth
  
  hyphaltip
  and
  claude
  committed
  93ae72e
- Bd: record the NCBI search for a third-lineage reference assembly
  
  hyphaltip
  and
  claude
  committed
  4187e2b