Skip to content

v0.9.0 release: results, default release v090, site data, README/About/landing (SEG-off replacement) - #337

Merged
hyphaltip merged 5 commits into
mainfrom
v090-results-draft
Nov 12, 2026
Merged

hyphaltip merged 5 commits into
mainfrom
v090-results-draft

Conversation

@hyphaltip

@hyphaltip hyphaltip commented Nov 12, 2026 •

Copy link
Copy Markdown
Member

The v0.9.0 release PR on the path the curator chose on 2026-11-12: the 372 genomes that moved under the tblastn outlier policy are taken from reruns with it OFF, and the GCA_052323795.1 outer-span extension (+16.7 kb, #302) is approved. Not merged, not tagged by me.

What

  • Results: results/2026-11-09_v090_{ascomycota,basidiomycota,mucoromycotina} (tables, lists, manifests, reports_all.tar.zst). The Ascomycota tarball holds the 372 SEG-off reruns instead of the 372 SEG-on reports: 19,343 reports, one per genome, no duplicates; Basidiomycota 3,263; Mucoromycotina 973.
  • scripts/build_site_data.py: v090 in RELEASES and DEFAULT_RELEASE = "v090" (v081 stays as the rollback); test updated.
  • Site data regenerated on the HPCC; README, About and landing text describe v0.9.0.

Checks

  • Full suite: 1,989 passed, 20 skipped.
  • Site build from these folders on the HPCC; counts agree with the tables (17,618 / 20,844 Ascomycota, 2,995 / 5,994 Basidiomycota).
  • Build-only Pages run 43200546755 succeeded (it does not deploy); the landing and results pages rendered from its artifact with no console errors.

For the curator

🤖 Generated with Claude Code

…finitive run with the 372 SEG-off reruns; v090 listed in RELEASES (not the default)

Co-Authored-By: Claude Sonnet 5.5 <[email protected]>
@hyphaltip

Copy link
Copy Markdown
Member Author

Site build check (HPCC, job 32038515, --release v090 into a scratch folder; the repo's web/ data and the default release are untouched): build_site_data.py and build_locus_shards.py both complete from these folders. Counts agree with the tables: bfd_asco 17,618 genomes / 20,844 loci, bfd_basidio 2,995 / 5,994, 23,664 genomes in all. Still not done: the default release switch, README/About/landing text, and the committed web/intro/data and shards, which follow the curator's choice.

hyphaltip and others added 2 commits November 12, 2026 02:21
…ng text, test (site data regenerated next)

Co-Authored-By: Claude Sonnet 5.5 <[email protected]>
@hyphaltip hyphaltip changed the title DRAFT: v0.9.0 results (only if the 372 SEG-off reruns replace the SEG-on Ascomycota reports) DRAFT: v0.9.0 release (results, default release v090, site data, README/About/landing) — only if the 372 SEG-off reruns replace the SEG-on reports Nov 12, 2026
…d the GCA_052323795.1 span (2026-11-12)

Co-Authored-By: Claude Sonnet 5.5 <[email protected]>
@hyphaltip hyphaltip changed the title DRAFT: v0.9.0 release (results, default release v090, site data, README/About/landing) — only if the 372 SEG-off reruns replace the SEG-on reports v0.9.0 release: results, default release v090, site data, README/About/landing (SEG-off replacement) Nov 12, 2026
@hyphaltip
hyphaltip marked this pull request as ready for review November 12, 2026 14:57
@hyphaltip
hyphaltip merged commit a8e132c into main Nov 12, 2026
2 checks passed
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant