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Merged
hyphaltip merged 2 commits into from
Nov 2, 2026
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v0.8.0 results: tables, manifests, report tarballs and site data of the definitive run #229

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build_site_data: v080 release entry (folders from the 2026-10-31 run;…
hyphaltip Nov 1, 2026
79b6e88
v0.8.0 results: tables, manifests and report tarballs of the definiti…
hyphaltip Nov 2, 2026
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9 changes: 9 additions & 0 deletions results/2026-10-31_v080_ascomycota/MANIFEST.txt
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v0.8.0 definitive run, ascomycota campaign
commit: a2933f7af48df14231ee6923f4578bc0f7b65f6b (branch prep-v0.7.1 = main 6959657 + version 0.8.0; src/db/scripts identical to main)
worktree: /bigdata/stajichlab/jstajich/projects/MATPredict/.claude/worktrees/run-a2933f7
DETECT_ARGS: --preset v0.8 (v0.7 policies + cross_family_policy on)
pixi.lock sha256: 675a15123d22857564dbb020592db9075cd60c8bb82f9cbb53a077abb31f4ac9
compute: throttled, 3 chains x 16 CPUs = 48 CPUs in flight (submit_throttled.py); jobs: results/2026-10-31_v080_submit/jobs.tsv; submitted 2026-10-31
note: GCA_023522825.1_DampeI2T2 timed out at the 3600 s genome limit in wave_7/small_006 (16 genomes in parallel; rc=124; v0.7.0 took 771 s). Re-run alone with GENOME_TIMEOUT=14400, same worktree and --preset v0.8 (job 31582728, 2746 s; rerun_timeout/); the report was copied into wave_7/small_006/runs/. Call identical to v0.7.0 (MAT1-1 high, JAMFTM010000001.1:954082-971459).
db content sha256 (database_digest, candidates excluded): 70afa14e884604f06fa359b083a43317d83458f60b1b0c8254be561d7a131676 (184 records)
determinism: 24 Ascomycota and 24 Basidiomycota genomes (seed 20261102) run twice on this commit with --preset v0.8: 0 changed loci between the runs and against this campaign (results/2026-11-02_determinism on HPCC)
31 changes: 31 additions & 0 deletions results/2026-10-31_v080_ascomycota/by_class.tsv
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class genomes reports called pct_called routing wall_median_s wall_p90_s wall_max_s loci n_label_unsupported tier_dropped tier_dropped_noted margin_fallback vote_collapse polished_model_lost distant_fragment high_supported high_tie_break high_grey outside_scope_high_supported outside_scope_high_tie_break outside_scope_high_grey defective_loci
Sordariomycetes 6016 6012 5626 93.6 lineage:5976; not_searched:36 138 212 2746 5752 114 0 0 0 0 0 0 0 0 0 4362 1 1 2202
Eurotiomycetes 3220 3214 3104 96.6 lineage:3210; not_searched:4 132 202 610 3302 10 0 0 0 0 0 0 0 0 0 2058 0 0 1507
Pichiomycetes 2967 2966 2822 95.1 lineage:2652; phylum_fallback:220; direct:91; not_searched:3 32 87 228 3274 31 2 2 0 0 2 0 0 0 0 0 0 0 153
Dothideomycetes 2731 2730 2587 94.8 lineage:2724; not_searched:6 124 206 2836 2705 326 0 0 0 0 0 0 302 11 0 1855 11 7 552
Saccharomycetes 2646 2598 2209 85.0 lineage:2246; phylum_fallback:337; direct:14; not_searched:1 23 47 137 4428 191 0 0 0 0 0 0 0 0 0 0 0 0 300
Lecanoromycetes 479 478 413 86.4 lineage:476; not_searched:2 109 173 259 434 9 0 0 0 0 0 0 0 0 0 260 0 0 179
Leotiomycetes 435 430 399 92.8 lineage:430 140 244 372 414 16 0 0 0 0 0 0 0 0 0 275 1 0 213
Dipodascomycetes 398 397 157 39.5 phylum_fallback:225; lineage:168; not_searched:4 35 83 143 159 3 0 0 0 0 0 0 0 0 0 0 0 0 10
Pezizomycetes 172 172 137 79.7 lineage:169; direct:3 59 105 164 137 2 0 0 0 0 0 0 0 0 0 0 0 0 51
Schizosaccharomycetes 68 67 66 98.5 direct:59; lineage:8 22 29 45 96 0 0 0 0 0 0 0 0 0 0 0 0 0 7
Orbiliomycetes 67 67 4 6.0 phylum_fallback:67 145 318 417 4 0 0 0 0 0 0 0 0 0 0 1 0 0 0
Lipomycetes 59 59 3 5.1 phylum_fallback:59 43 154 298 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
NA 52 48 29 60.4 phylum_fallback:38; lineage:10 119 221 308 32 1 0 0 0 0 0 0 0 0 0 16 0 0 6
Taphrinomycetes 22 22 5 22.7 lineage:22 19 28 39 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Trigonopsidomycetes 16 16 0 0.0 phylum_fallback:16 34 59 61 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Arthoniomycetes 13 13 8 61.5 lineage:11; not_searched:2 91 157 160 8 1 0 0 0 0 0 0 0 0 0 7 0 0 3
Geoglossomycetes 12 12 6 50.0 lineage:12 108 163 179 6 0 0 0 0 0 0 0 0 0 0 6 0 0 2
Pneumocystomycetes 11 11 9 81.8 lineage:11 12 21 22 9 2 0 0 0 0 0 0 0 0 0 0 0 0 0
Lichinomycetes 10 10 7 70.0 lineage:10 151 271 323 8 1 0 0 0 0 0 0 0 0 0 4 0 0 4
Candelariomycetes 4 4 4 100.0 lineage:4 131 150 150 4 0 0 0 0 0 0 0 0 0 0 1 0 0 2
Sporopachydermiomycetes 4 4 4 100.0 phylum_fallback:4 33 64 64 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0
Alloascoideomycetes 3 3 3 100.0 phylum_fallback:3 46 49 49 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Coniocybomycetes 2 2 2 100.0 lineage:2 96 143 143 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Saitoellomycetes 2 2 0 0.0 lineage:2 12 17 17 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Laboulbeniomycetes 1 1 0 0.0 lineage:1 57 57 57 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Neolectomycetes 1 1 0 0.0 lineage:1 60 60 60 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Novakomycetes 1 1 0 0.0 lineage:1 47 47 47 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Sareomycetes 1 1 1 100.0 lineage:1 102 102 102 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Xylobotryomycetes 1 1 1 100.0 lineage:1 95 95 95 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Xylonomycetes 1 1 1 100.0 lineage:1 213 213 213 1 0 0 0 0 0 0 0 0 0 0 1 0 0 1
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