Accept the five tier-3 MATss, MATbz and MATpf records

CHANGELOG.md

@@ -7,6 +7,7 @@ release completed.
 ## [Unreleased]
 
 ### Added
+- Five accepted tier-3 records (curator sign-off 2026-10-30, J. Stajich): *Saccharomycopsis schoenii* GDD12 MATss (MATa-MATalpha left cluster and MATa right cluster, `db/Ascomycota/Ascoideales/`), *Barnettozyma californica* PB4207 MATbz and *Petasospora fabianii* MATpf (JOY008 MATa, TBRC 4498 MATalpha, `db/Ascomycota/Phaffomycetales/`). The gene models are our own (RNA-seq for *S. schoenii*, sequence-based for the others). With them, 20 of the 21 genomes that lose every MATsc/MTL call under the v0.8 cross-family rules are called again by their own family (trial run, `--preset v0.8`); *Ogataea degrootiae* GCA_019232045.1 stays uncalled.
 - Raw-reads wave 2 (`datasets/reads/sra_survey/pilot/wave2/`): 55 more tier A, A1 and B species typed (1,468 runs; 13 confirmed, 16 provisional, 7 provisional-homothallic, 49 withheld), yeast idiomorph names (a / alpha, P / M, A / B) carried through, *Botrytis cinerea* typed on all 333 eligible samples. Species reports gain an allele-count table for all studies pooled or study by study, per run or per clone, and clone groups for every species with 10 or more sketched runs (average linkage at 0.998; counts per clone only where the clone number is stable). Output only; the genome tables and the database are unchanged.
 - Idiomorph labels beside the raw names (curator rulings of 2026-10-28): `scripts/idiomorph_label_registry.json` (lineage and reference-organism codes, cell tokens, gene maps), `scripts/idiomorph_labels.py`, `scripts/label_loci_table.py`; the site data carry `label_alleles` in `taxa.json`, `call_label` / `alleles_label` in the genome tables and `data/idiomorph_labels.json`, and the explorer shows `Lineage__System_Cell` labels (for example `Taphr__SchPom_M`, `Sacch__CanAlb_alpha`, `Peziz__AspFum_MAT1-1`) with the raw name and the reference organism in the tooltip, and a switch back to the raw names. Output only: the database, the reports and the raw columns are unchanged. All 27,885 v0.7.0 loci are labelled. Duplicate family calls (`scripts/dedupe_family_calls.py`) are not removed from the counts.
 - Raw-reads pages (`web/intro/reads/`): an overview of the wave 1 read typing (112 species, 1,629 runs, 599 of 605 single-allele calls agree with an assembly call) with the confidence of each species panel (confirmed / provisional / withheld), and one report per species (calls, agreement with assemblies, calls by study, every run, TSV download). Data written at site-build time by `scripts/build_reads_site.py` from `datasets/reads/sra_survey/pilot/wave1/`; the landing page links to it. The counts are of public runs, not population frequencies. The three curated collections (Fola 148 strains, *A. fumigatus* 331 read sets, *Coccidioides* 558 strains) have their own reports on the same pages, built from their committed tables; the old raw-reads table and Coccidioides chart on the landing page are replaced by a pointer.

db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gbk

@@ -0,0 +1,109 @@
+LOCUS       CM143129.1              3130 bp    DNA              UNK 01-JAN-1980
+DEFINITION  44080_gdd12_MATss_MATa-MATalpha core locus segment 0 (CM143129.1).
+ACCESSION   44080_gdd12_MATss_MATa-MATalpha.segment0
+VERSION     44080_gdd12_MATss_MATa-MATalpha.segment0
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     gene            1..603
+                     /gene="MATalpha2"
+                     /role="core_MAT"
+     CDS             1..603
+                     /gene="MATalpha2"
+                     /role="core_MAT"
+                     /translation="MESLSNVYNSLLSELTVDSIVNNKMEVNAIKQKVVKILKEYSKIS
+                     SQNRTSLLSVADFCDILIQLIGERYNLLNDIFYCQNRITRTLSNVPVVKNDEPAEEVSF
+                     NIVTQSQIKRSDYKALRKCRHFNTETRRKLEQWYKLSDFSKEAIEKFSNEVNLDVVQIK
+                     NWVSNKKRKEKKAISKGIIDVSKTFSPSNVYVMTGDL"
+                     /transl_table=12
+     gene            complement(672..1247)
+                     /gene="MATalpha1"
+                     /role="core_MAT"
+     CDS             complement(672..1247)
+                     /gene="MATalpha1"
+                     /role="core_MAT"
+                     /translation="MGILQQNYKTKCHKFTNYSFRKVKSATPIRYPTTFQNTFYFDSLP
+                     KIPKCYSKLEDLLTEFKKTPRMNEISDQCTEKKKNKAQKKPTKRKLNGFIAYRSYYSKN
+                     IHDTALQIEVSKRLATVWKDDPSADIWKRFAFEYNKSDENMPFLEWLDVKTSQMDKVNK
+                     QATNGCDFFLDFEVLNFICDIEGKYVVS"
+                     /gene_class="alpha_box"
+                     /transl_table=12
+     gene            1613..2141
+                     /gene="MATa1"
+                     /role="core_MAT"
+     CDS             join(1613..1879,2097..2141)
+                     /gene="MATa1"
+                     /role="core_MAT"
+                     /translation="MLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSN
+                     NSRYSRKTTEYLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP"
+                     /transl_table=12
+     gene            complement(2360..3130)
+                     /gene="sla2"
+                     /role="flanking_conserved"
+     CDS             complement(2360..3130)
+                     /gene="sla2"
+                     /role="flanking_conserved"
+                     /translation="EIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKNLQDLS
+                     PIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNRWTEGL
+                     ISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKATQFSKT
+                     QDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQQAEII
+                     KLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY"
+                     /gene_class="sla2_homolog"
+                     /transl_table=12
+ORIGIN
+        1 atggaatcac tttccaacgt atacaatagc cttttgtcgg agctcacggt tgattctatt
+       61 gtaaacaaca agatggaagt caatgcaatc aaacaaaagg ttgttaaaat attgaaagaa
+      121 tattcgaaaa tatcctctca gaacaggaca tctttattgt cggttgctga tttctgtgat
+      181 atcttgatcc aactaattgg cgaaagatat aatcttttga atgacatttt ttactgtcaa
+      241 aatagaatta ctaggacgtt atcaaacgtt cctgttgtta aaaacgacga gcctgcagag
+      301 gaagtctcat tcaacatagt gacacagtca caaataaaac gtagtgacta caaggcctta
+      361 cggaaatgcc gtcatttcaa tactgaaacc agacggaagc ttgaacaatg gtacaagcta
+      421 agtgactttt caaaggaagc aattgaaaag tttctgaatg aagtcaattt ggacgttgtt
+      481 cagatcaaga actgggtttc gaataagaaa agaaaagaaa aaaaagctat aagcaagggt
+      541 attatcgatg ttctgaagac ttttagtcca agcaatgtat acgtcatgac tggggattta
+      601 taaatatttt ctttctttcg tttatttatt tatttattta taataaatat atataagtat
+      661 ttaattcatt tttatgaaac cacatatttt ccttctatat cacagatgaa attgagaact
+      721 tcaaaatcta ggaaaaagtc acaaccattt gtagcttgtt tatttacctt gtccatttga
+      781 ctagttttga catcaagcca ttctagaaat ggcatgtttt cgtctgactt attatactca
+      841 aacgcaaatc ttttccatat atccgctgac gggtcatctt tccacactgt tgccaacctt
+      901 ttagatactt caatctggag agctgtatcg tggatatttt tagaataata tgacctgtaa
+      961 gcaataaagc cattcaactt tcttttggtt ggtttcttct gtgccttgtt tttctttttt
+     1021 tccgtacatt gatcgcttat ttcattcatt ctgggagttt tcttgaattc agttaataaa
+     1081 tcttcaagct tcagataaca tttaggaatt ttaggaagag aatcgaaata aaatgtattt
+     1141 tgaaatgtag taggatatct tattggtgtt gcacttttaa ccttacgaaa agaatagttg
+     1201 gtgaatttat ggcattttgt tttatagttc tgctgtaaga tgcccatttt tttctttctg
+     1261 gtttttattt tctttgcaaa acagtatata ataaatgcaa atgaatatat ttcaaggaat
+     1321 ttcaaggaaa agtactcatt tatatgtatt ttgtatatac taaagcaact aaaacaataa
+     1381 taataatgca cgcatgcatg tcaaaaataa gtataaactt atttttttgc ttttctttta
+     1441 agggtgctta atgatgatta actttccttc tggcatccac aagaaaaaaa aaaaagcaaa
+     1501 aaacacgaac tcaatttgca tcggaacttt actattttag ttatcggatg cagcaataaa
+     1561 gagtggattc aaagtgtgtg ataaggattc agtttataat aaaacagaaa ggatgttgat
+     1621 cgtcgacatt ttcttatcac aatccactct caaatccagc aaatatacag ataagttaag
+     1681 aaagtatctt gaagatagag gtgtagatat agttgtttta atgcatgacc agctgcaaac
+     1741 gtctaataat tcgagatact ctaggaaaac tactgaatat ctagaacttc ttttcgatac
+     1801 aaatcctaga cctaattctc gtgaaagatt attcatagcg aagcaatgtg gattaagtgc
+     1861 caaacaagtc agaatatggg tgagtatttt attattatta ttattattat tattattatt
+     1921 cttcttcttc ttcttcttgt tgttgttgtt ttatacaaat atatatatat atatatatat
+     1981 atatatatat atatatatat tatttgtgtg ggacgggggt ggaggaggca gcagcaacct
+     2041 gaaatttata tttttatttg gcaagcaata tctagaacta acaagtattt ttatagttta
+     2101 ccaacagacg tgctagggtc aaaaagacac aaaagccata gaataataat ttattattac
+     2161 gtaaatatat atatataaag agaaagagag agaataaata ataaacttta atctttgttt
+     2221 ttcttgtttt tcttgttttt tttttttttt ttttttgttt tttttaatcg tatgttgtaa
+     2281 tatttctttc tttaaataaa ttttttattg agtgatatac tggaggagta agagtgtaat
+     2341 tttaatttaa ttaatatatc taatattctt catcattatc gctatcatca tcatcatctt
+     2401 gataactata ttttctaata tcacctaatc tctttctagc agcacctaag gcattctcca
+     2461 acttgatgat ttctgcttgt tgtttcattt cttcttttct attatcaatg atactcaact
+     2521 tggagaaatc aatatcatca ttaactaatt gtgtagattt attaatcaat tcttgcactt
+     2581 ggcttactaa gctcttgcaa gcaatagaca ccttcttact tgcatcttcc aaattgtctt
+     2641 gagtcttgga gaactgcgta gctttaactc ttgcagctgc cactagctga atagtagaag
+     2701 atgcaacttc attagatgcc acaatcaatt cctcgtgtgt attcttacca ctcaaattac
+     2761 catccgcagt ttgaattaat aagttggtag cagatgcaac agctttagca gcagagatta
+     2821 atccttctgt ccatctatta ttctttttgt agaattgggc tcttgtactt gaacctttac
+     2881 catttgcaac aatctcatgt tgagtatcga tggctgcaga gattaacatc gaaatagctt
+     2941 tggtgatagc aatggatgct gccaaaatag ccttattgac ttctaagtca ataggtgaca
+     3001 agtcctgtaa gtttttgctg gttagcaacg acgtcaagtg taatgtagct tgcttgataa
+     3061 cctccgcagc agcgttcatt tcgttgtcca ccaagctttc taactcctct tctgtttgtt
+     3121 tttcgatctc
+//

db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gff3

@@ -0,0 +1,6 @@
+##gff-version 3
+##sequence-region CM143129.1 470349 473478
+CM143129.1	MATPredict	gene	470349	470951	.	+	.	ID=44080_gdd12_MATss_MATa-MATalpha.gene0;Name=MATalpha2;role=core_MAT
+CM143129.1	MATPredict	gene	471020	471595	.	-	.	ID=44080_gdd12_MATss_MATa-MATalpha.gene1;Name=MATalpha1;role=core_MAT
+CM143129.1	MATPredict	gene	471961	472489	.	+	.	ID=44080_gdd12_MATss_MATa-MATalpha.gene2;Name=MATa1;role=core_MAT
+CM143129.1	MATPredict	gene	472708	473478	.	-	.	ID=44080_gdd12_MATss_MATa-MATalpha.gene3;Name=sla2;role=flanking_conserved

db/candidates/Ascomycota/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml → db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml

@@ -144,7 +144,7 @@ evidence:
       paper''s'
     citations: *id001
 validation:
-  status: needs_review
+  status: accepted
   rejection_reason: null
   accession_resolved: false
   accession_resolved_date: null

db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/proteins.faa

@@ -0,0 +1,8 @@
+>44080_gdd12_MATss_MATa-MATalpha|gene_index=0|name=MATalpha2|role=core_MAT
+MESLSNVYNSLLSELTVDSIVNNKMEVNAIKQKVVKILKEYSKISSQNRTSLLSVADFCDILIQLIGERYNLLNDIFYCQNRITRTLSNVPVVKNDEPAEEVSFNIVTQSQIKRSDYKALRKCRHFNTETRRKLEQWYKLSDFSKEAIEKFSNEVNLDVVQIKNWVSNKKRKEKKAISKGIIDVSKTFSPSNVYVMTGDL
+>44080_gdd12_MATss_MATa-MATalpha|gene_index=1|name=MATalpha1|role=core_MAT
+MGILQQNYKTKCHKFTNYSFRKVKSATPIRYPTTFQNTFYFDSLPKIPKCYSKLEDLLTEFKKTPRMNEISDQCTEKKKNKAQKKPTKRKLNGFIAYRSYYSKNIHDTALQIEVSKRLATVWKDDPSADIWKRFAFEYNKSDENMPFLEWLDVKTSQMDKVNKQATNGCDFFLDFEVLNFICDIEGKYVVS
+>44080_gdd12_MATss_MATa-MATalpha|gene_index=2|name=MATa1|role=core_MAT
+MLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSNNSRYSRKTTEYLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP
+>44080_gdd12_MATss_MATa-MATalpha|gene_index=3|name=sla2|role=flanking_conserved
+EIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKNLQDLSPIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNRWTEGLISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKATQFSKTQDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQQAEIIKLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY

db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gbk

@@ -0,0 +1,123 @@
+LOCUS       CM143129.1              4190 bp    DNA              UNK 01-JAN-1980
+DEFINITION  44080_gdd12_MATss_MATa core locus segment 0 (CM143129.1).
+ACCESSION   44080_gdd12_MATss_MATa.segment0
+VERSION     44080_gdd12_MATss_MATa.segment0
+KEYWORDS    .
+SOURCE      .
+  ORGANISM  .
+            .
+FEATURES             Location/Qualifiers
+     gene            1..1848
+                     /gene="sla2"
+                     /role="flanking_conserved"
+     CDS             1..1848
+                     /gene="sla2"
+                     /role="flanking_conserved"
+                     /translation="NLLQKFKKLQQKAASAQEAIDKRDRIEKDLKAKNVELADLIKERD
+                     RARLEIDKLRGSKDSLIEKLEAEVNTLKDKLDVTERNQSSNLNSIFNAHRKEMEELETK
+                     LKERESQISEMSPESNAELQETLREKDEEIEILQQTMDDALKQLAESKRESEEAIDEQI
+                     DTVLQEHIMKLVAIIDSILQSGVKRIEDSLFELDSSMQGGNQNSSPSYLLTIIEKAGET
+                     SQEFATAFNNFIADGPSGDYAEIISTISEFTSCITDVELNVKGIIKFCKTENLENSLLS
+                     SARLVGETCIEFLEDLLSKNLESLSEEQKSDKVIEGVVEIHERLEELTTLIETIASTSG
+                     GGGGGGGGSSSSNSNKKFIEIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKN
+                     LQDLSPIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNR
+                     WTEGLISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKAT
+                     QFSKTQDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQ
+                     QAEIIKLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY"
+                     /gene_class="sla2_homolog"
+                     /transl_table=12
+     gene            complement(2066..2964)
+                     /gene="MATa1"
+                     /role="core_MAT"
+     CDS             complement(join(2066..2110,2316..2654,2713..2964))
+                     /gene="MATa1"
+                     /role="core_MAT"
+                     /translation="MSDNEKIAITVGEMVAKLRDTEQCIIRTTGRTSADISISDFTKDT
+                     NSYVQYYHLTESEHIPEELKLSYKPLIERYQTYLNTIIKLSDAAIKSGFKVCDKDSVYN
+                     KTERMLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSNNSRYSRKTTE
+                     YLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP"
+                     /transl_table=12
+     gene            3399..4190
+                     /gene="MATa2"
+                     /role="core_MAT"
+     CDS             3399..4190
+                     /gene="MATa2"
+                     /role="core_MAT"
+                     /translation="MSKKILSFQLPKVNRNKDNNIAVTGFPYMDRTTKKHTSYETYNVI
+                     AVNCDVIVSTVISKKSNKNNNRKEEPTRPRNKFMIARSFINCLLRYKETAINSQTVSKI
+                     VSDIWRNSGQNFVSYFDYLAIFDNNLHQQIFDNDFLRFKTKRTINKKHLNMKGTFVYEV
+                     PEKSYLAEQIEPQTILMKSRKEYLDLCASSLLGKENTILESTLKINAHCDTKSVALPFD
+                     ILKNSKKTQYGKPRKSKKLDLKQPMFSKFSILSSKVGKQKI"
+                     /transl_table=12
+ORIGIN
+        1 aatttattgc aaaaattcaa aaagttgcaa caaaaggctg catctgcaca ggaggctatt
+       61 gataagagag acaggattga gaaagatttg aaggcgaaga atgttgaatt ggcagatttg
+      121 attaaagaac gtgacagagc taggttggag attgacaagt taagagggtc taaggactct
+      181 ttgattgaaa aactagaagc cgaagttaat actttgaagg ataagttgga tgtgacagaa
+      241 agaaaccagt cgtctaattt gaactccatt ttcaacgcac accgaaaaga aatggaagaa
+      301 cttgaaacca aattgaaaga aagagaatcg caaatctcag agatgtcacc agagtcaaat
+      361 gctgagctac aggaaacatt gcgtgaaaag gatgaggaaa tcgaaatttt acaacagaca
+      421 atggatgatg cgttaaaaca gttagccgag tctaaaaggg aaagcgaaga agctatcgat
+      481 gaacaaattg atacagtgtt acaagaacat atcatgaagc tagttgctat tatagattcc
+      541 attttgcaaa gcggtgtgaa acgaatcgaa gatagtttat tcgagcttga ttcttcgatg
+      601 caaggcggta atcaaaactc atcaccatca tacttgctaa ccattattga aaaagcaggc
+      661 gaaacaagtc aagaatttgc tacggctttc aataacttta tcgctgatgg accaagcggt
+      721 gattatgctg agatcatttc tactatttca gaattcactc tgtgtattac agatgttgag
+      781 ttgaatgtta aaggcatcat taagttttgc aagacagaga atttggaaaa ctcgctatta
+      841 tcatctgcaa gattggttgg tgagacatgc attgaatttt tggaagattt attgtctaag
+      901 aatttagaaa gcttgagcga agaacaaaag tcagacaaag ttattgaagg tgtcgttgaa
+      961 atccatgaaa gattagaaga attgactaca ttgattgaga ctattgcatc tacgagcggt
+     1021 ggcggcggcg gcggcggcgg tggcagtagc agcagcaaca gcaacaagaa gttcattgag
+     1081 atcgaaaaac aaacagaaga ggagttagaa agcttggtgg acaacgaaat gaacgctgct
+     1141 gcggaggtta tcaagcaagc tacattacac ttgacgtcgt tgctaaccag caaaaactta
+     1201 caggacttgt cacctattga cttagaagtc aataaggcta ttttggcagc atccattgct
+     1261 atcaccaaag ctatttcgat gttaatctct gcagccatcg atactcaaca tgagattgtt
+     1321 gcaaatggta aaggttcaag tacaagagcc caattctaca aaaagaataa tagatggaca
+     1381 gaaggattaa tctctgctgc taaagctgtt gcatctgcta ccaacttatt aattcaaact
+     1441 gcggatggta atttgagtgg taagaataca cacgaggaat tgattgtggc atctaatgaa
+     1501 gttgcatctt ctactattca gctagtggca gctgcaagag ttaaagctac gcagttctcc
+     1561 aagactcaag acaatttgga agatgcaagt aagaaggtgt ctattgcttg caagagctta
+     1621 gtaagccaag tgcaagaatt gattaataaa tctacacaat tagttaatga tgatattgat
+     1681 ttctccaagt tgagtatcat tgataataga aaagaagaaa tgaaacaaca agcagaaatc
+     1741 atcaagttgg agaatgcctt aggtgctgct agaaagagat taggtgatat tagaaaatat
+     1801 agttatcaag atgatgatga tgatagcgat aatgatgaag aatattagat atattaatta
+     1861 aattaaaatt acactcttac tcctccagta tatcactcaa taaaaaattt atttaaagaa
+     1921 agaaatatta caacatacga ttaaaaaaaa caaaaaaaaa aaaaaaaaaa acaagaaaaa
+     1981 caagaaaaac aaagattaaa gtttattatt tattctctct ctttctcttt atatatatat
+     2041 atttacgtaa taataaatta ttattctatg gcttttgtgt ctttttgacc ctagcacgtc
+     2101 tgttggtaaa ctataaaaat acttgttagt tctagatatt gcttgccaaa taaaaatata
+     2161 aatttcaggt tgctgctgcc tcctccaccc ccgtcccaca caaataatat atatatatat
+     2221 atatatatat atatatttgt ataaaacaac aacaacaaga agaagaagaa gaagaataat
+     2281 aataataata ataataataa taataaaata ctcacccata ttctgacttg tttggcactt
+     2341 aatccacatt gcttcgctat gaataatctt tcacgagaat taggtctagg atttgtatcg
+     2401 aaaagaagtt ctagatattc agtagttttc ctagagtatc tcgaattatt agacgtttgc
+     2461 agctggtcat gcattaaaac aactatatct acacctctat cttcaagata ctttcttaac
+     2521 ttatctgtat atttgctgga tttgagagtg gattgtgata agaaaatgtc gacgatcaac
+     2581 atcctttctg ttttattata aactgaatcc ttatcacaca ctttgaatcc actctttatt
+     2641 gctgcatccg ataactaaat taattagtaa atgtctcata aaataatata agagaaagaa
+     2701 agtatggcat accttgatta ttgtgttgag ataagtctga tagcgttcaa tcaatggctt
+     2761 ataacttaat ttcaactctt ctggaatatg ttcagactct gtaagatgat aatactggac
+     2821 atagctattt gtatcttttg taaaatcaga aatggagatg tcagcacttg ttctaccagt
+     2881 tgtacgtatg atgcattgct ccgtgtctct taacttggcg accatttctc ccaccgtaat
+     2941 agcaatcttt tcattatcac tcatgttgca gtatatttat gagttatttt ttactttttt
+     3001 cgataattag aaataaactt aagaggaaac aataatattt atatgaagtt aggaagcaaa
+     3061 aaagcaaact atagttaaat accatatatt tgatcagtca agaaaaaaca accaaaacca
+     3121 agatttatga gaaagatgtg caaagacacg tgataaaaat tcaaattggg atcaatcgtt
+     3181 ttttatgaat cacatttgat accatatttt tcatattttt tatttttttt atttcttgca
+     3241 tatatatatt ttttttttta tttataataa ccttcttttc cttcaaaaat aaattatttc
+     3301 aaaaattttc tttatcattt taaatcacta aattattcca atactatata ctatatcaca
+     3361 aattagaact gttcattaaa atttaaccaa tacctaatat gtcaaagaaa atactatctt
+     3421 tccaattacc taaagtaaat agaaataaag ataacaatat agctgttact ggatttcctt
+     3481 atatggatag aaccaccaaa aaacatacaa gttatgaaac atacaatgtt attgcagtta
+     3541 attgcgatgt tattgtatct accgtaatac tgaaaaagag taataaaaat aataatagaa
+     3601 aagaagaacc aacaagacct aggaataaat tcatgatagc aagaagtttt attaattgtt
+     3661 tattaagata caaagagaca gcgataaata gccaaacggt atcaaagata gtttcagata
+     3721 tctggagaaa ctcaggtcag aactttgtga gttattttga ttatcttgcg atattcgaca
+     3781 ataatcttca ccagcagata tttgataatg attttttaag attcaaaaca aaaagaacca
+     3841 taaataagaa gcacttaaat atgaaaggta cctttgtcta tgaagttcct gagaaatcat
+     3901 accttgcaga gcaaattgaa cctcaaacca tattaatgaa atctagaaaa gagtatcttg
+     3961 atttatgtgc aagctcacta ttaggaaagg agaacacaat attagaatcg acattgaaga
+     4021 ttaatgctca ttgtgataca aaactggtcg cactaccatt tgacatatta aaaaactcaa
+     4081 aaaaaactca atatggaaaa cctagaaaat caaaaaaatt agatcttaaa cagccgatgt
+     4141 tctcaaagtt ttctatactc tccagtaaag tgggaaagca aaaaatttaa
+//

db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gff3

@@ -0,0 +1,5 @@
+##gff-version 3
+##sequence-region CM143129.1 533981 538170
+CM143129.1	MATPredict	gene	533981	535828	.	+	.	ID=44080_gdd12_MATss_MATa.gene0;Name=sla2;role=flanking_conserved
+CM143129.1	MATPredict	gene	536046	536944	.	-	.	ID=44080_gdd12_MATss_MATa.gene1;Name=MATa1;role=core_MAT
+CM143129.1	MATPredict	gene	537379	538170	.	+	.	ID=44080_gdd12_MATss_MATa.gene2;Name=MATa2;role=core_MAT

db/candidates/Ascomycota/44080_gdd12_MATss_MATa/metadata.yaml → db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/metadata.yaml

@@ -126,7 +126,7 @@ evidence:
       paper''s'
     citations: *id001
 validation:
-  status: needs_review
+  status: accepted
   rejection_reason: null
   accession_resolved: false
   accession_resolved_date: null