Welcome to the CUNY Graduate School of Public Health and Health Policy Applied Biostatistics 2 organization. This course expands on modern biostatistical and epidemiological regression modeling methods, including Generalized Linear Models (GLMs), logistic and count data models, survival analysis, and longitudinal data analysis.
Instructor: Prof. Levi Waldron (@lwaldron)
All 10 course sessions, lab exercises, and datasets are hosted in the cunybios2 Monorepo.
To clone all materials into RStudio:
- In RStudio, choose File → New Project → Version Control → Git.
- Enter the Repository URL:
https://github.com/waldronbios2/cunybios2.git - Click Create Project. All session folders, datasets, and vignettes will be immediately accessible.
To install the complete course package or specific sessions directly in R:
# Install remotes if needed
if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes")
# Install the full course package
remotes::install_github("waldronbios2/cunybios2")
# Or install a specific session package
remotes::install_github("waldronbios2/cunybios2", subdir = "session1")| Session | Topic | Slides & Notes | Video Lecture | Video Lab |
|---|---|---|---|---|
| 01 | Multiple linear regression review | HTML · PDF | ▶ Watch | ▶ Watch |
| 02 | Linear and logistic regression as GLMs | HTML · PDF | ▶ Watch | ▶ Watch |
| 03 | Regression coefficients and model matrices | HTML · PDF | ▶ Watch | ▶ Watch |
| 04 | Loglinear regression (Part 1) | HTML · PDF | ▶ Watch | ▶ Watch |
| 05 | Loglinear models & count data (Part 2) | HTML · PDF | ▶ Watch | ▶ Watch |
| 06 | Censored data, Kaplan-Meier & Log-rank | HTML · PDF | ▶ Watch | ▶ Watch |
| 07 | Proportional Hazards & AFT models | HTML · PDF | ▶ Watch | ▶ Watch |
| 08 | Survival analysis (Part 3) | HTML · PDF | ▶ Watch | ▶ Watch |
| 09 | Repeated Measures & Longitudinal Data I | HTML · PDF | ▶ Watch | ▶ Watch |
| 10 | Repeated Measures & Longitudinal Data II | HTML · PDF | ▶ Watch | ▶ Watch |
Note
Repository Consolidation: The individual session1 through session10 repositories have been unified into the cunybios2 monorepo and are preserved in this organization as read-only historical archives.