chore(deps): update virtool to 41.16.0 - #208
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Adapts to breaking changes in the workflow SDK between 41.10.0 and 41.16.0: - `virtool.indexes.constants.INDEX_SQLITE_FILE_NAME` moved to `virtool.workflow.data.indexes`. - `WFIndex.create` now takes an async-iterable of OTU dicts instead of a plain list. - `WFIndex.get_otu_refs_by_sequence_ids` was renamed to `get_otu_summaries_by_sequence_ids` (same return shape). The bowtie2_index_path removal (virtool eb3367db9) required no changes here since this workflow builds its own bowtie2 indexes from the subtraction FASTA rather than downloading prebuilt index files.
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🎉 This PR is included in version 5.21.0 🎉 The release is available on GitHub release Your semantic-release bot 📦🚀 |
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Summary
virtoolgit tag from 41.15.0 to 41.16.0 and regenerateuv.lock.WFSubtraction.bowtie2_index_path, virtool#eb3367db9) doesn't affect this workflow since it builds its own bowtie2 indexes locally from the subtraction FASTA rather than downloading prebuilt index files.