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Destructive and background failures use alert() or say nothing at all

Status: Open.

#211 In veg/datamonkey3;

· stevenweaver opened on Aug 13, 2026

An uploaded tree whose labels do not match the alignment is accepted silently and fails at run time

Status: Open.

#210 In veg/datamonkey3;

· stevenweaver opened on Aug 13, 2026

The improved stop-codon report is on a path those files cannot reach

Status: Open.

#206 In veg/datamonkey3;

· stevenweaver opened on Aug 12, 2026

A cancelled local analysis un-cancels itself and reports as completed

Status: Open.

#201 In veg/datamonkey3;

· stevenweaver opened on Aug 12, 2026

Diagnose the not-codon-aligned failure properly — describe it, do not offer to repair it

Status: Open.

#199 In veg/datamonkey3;

· stevenweaver opened on Aug 12, 2026

Return visits look like data loss — and the obvious fix silently narrows the Results history

Status: Open.

#196 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

Branch options "Custom" and "Unlabeled" are rejected by HyPhy after a full model fit

Status: Open.

#192 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

Let users supply their own tree, and tag branches on the tree they actually chose

Status: Open.

#191 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

onMount: a permanent dead spinner on first visit, and a lost file on every return visit

Status: Open.

#190 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

[state-qa] No cross-tab coordination + missing onblocked handler in initDB

bugSomething isn't workingSomething isn't working

priority: lowLow priority - nice to haveLow priority - nice to have

Status: Open.

#178 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

[state-qa] findFileByName + saveFile TOCTOU could create duplicate file records under truly-concurrent same-name uploads

bugSomething isn't workingSomething isn't working

priority: lowLow priority - nice to haveLow priority - nice to have

Status: Open.

#176 In veg/datamonkey3;

· stevenweaver opened on Aug 11, 2026

AxoMEME silently mistranslates non-universal genetic codes (TGA read as stop, not Trp)

bugSomething isn't workingSomething isn't working

priority: mediumMedium priority - standard issueMedium priority - standard issue

Status: Open.

#152 In veg/datamonkey3;

· stevenweaver opened on Aug 8, 2026