Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Ziyu Li
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Nov 25, 2025 - Jupyter Notebook
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spatial-metabolomics
Here are 7 public repositories matching this topic...
Lithops-based Serverless implementation of the METASPACE spatial metabolomics annotation pipeline
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Jul 6, 2023 - Jupyter Notebook
Copy of SPICEM (Spatial Inference of Cellular Environments via Metabolic Modeling) repository for sharing
chronic-kidney-disease spatial-transcriptomics spatial-metabolomics metabolic-modeling renal-cell-carcinoma diabetic-nephropathy
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Jul 8, 2026 - Python
Peak group alignment of mass spectrometry imaging data onto a reference m/z grid
python bioinformatics bioinformatics-pipeline mass-spectrometry maldi bioinformatics-algorithms imzml mass-spectrometry-imaging bioinformatics-tool anndata imzml-format spatial-metabolomics maldi-imaging-proteomics bioinformatics-software maldi-imaging peak-alignment
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Oct 14, 2026 - Jupyter Notebook
Rapid spatial clustering and enriched metabolite discovery for MSI data.
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Apr 17, 2026 - R
WSI-MSI Workbench
ai deep-learning image-registration whole-slide-imaging mass-spectromtry mass-spectrometry-imaging histopathology spatial-metabolomics
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Aug 7, 2026 - Python
Pathway and molecular family analysis for MSI-based spatial metabolomics and lipidomics
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Oct 28, 2026 - Python
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