This script performs bacterial genomic analysis - such as SNP calling & antibiotic resistance detection in Klebsiella pneumoniae (FastQC, Snippy, AMR gene screening)
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May 16, 2025 - Shell
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snippy
Here are 7 public repositories matching this topic...
File templates in Neovim powered by nvim-snippy
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May 27, 2024 - Lua
This repository is a community-driven hub for sharing snippets for the cross-platform desktop application Snippy
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Apr 11, 2026 - Shell
A Python library for scraping book data across multiple platforms. Use with caution , as excessive scraping may result in your IP being banned.
nlp bot crawler natural-language-processing scraper scraping crawling web-scraping crawl crawlers web-crawling crawling-python snippy playwright web-scraping-python
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Apr 2, 2026 - Python
mtb-mixed-infection-pipeline enables detection of mixed Mycobacterium tuberculosis infections using a reproducible workflow that integrates Snippy, FreeBayes (pooled mode) & MixInfect2. It processes raw reads through alignment, variant calling & statistical analysis to identify mixed-strain infections
whole-genome-sequencing variant-analysis freebayes mixed-infection mycobacterium-tuberculosis snippy mixinfect2
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Jun 10, 2025 - R
Reproducible core-SNP phylogenetic pipeline for public E. coli genomes using Snippy, IQ-TREE, Biopython, SQLite, and metadata-linked visualization.
python bioinformatics genomics sqlite biopython phylogenetics public-health microbial-genomics ecoli snp-analysis snippy iqtree
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Aug 1, 2026 - Python
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