A comprehensive and customizable R package for microbiome analysis.
This is an initiative to help understand Statistical methods and Machine learning in a naive manner. You will find scripts, and theoretical contents required to clarify concepts, especially for bio-informatic students.
End-to-end metagenomics pipeline for 16S rRNA sequencing data, ecological Alpha/Beta diversity calculations (QIIME2/phyloseq), 3D PCoA projections, and dysbiosis profiling.
code to reproduce AIH results
Package for automation of statistics that are widely used in metabolomics.
A complete SSR population genetics toolkit for any species. Includes data cleaning, UPGMA clustering, PCoA, STRUCTURE formatting, STRUCTURE barplot visualization, and supporting scripts for reproducible microsatellite population analyses.
Unsupervised learning of human microbiome community structure using HMPv13 dataset; PCoA, hierarchical clustering, and purity evaluation in R
Microbiome Diversity Analysis Pipeline — alpha/beta diversity + top-N composition in one command
R functions
Fast PCoA based on randomized SVD
Functional diversity of an urban campus under construction (Las Peñas, ESPOL, Guayaquil). R pipeline computing FRic, FEve, FDiv, FDis, Rao's Q and functional redundancy on Gower distances with Cailliez-corrected PCoA, plus null models, taxonomic contrast and abundance-weighting sensitivity. Flora and fauna analysed separately by design.
To associate your repository with the pcoa topic, visit your repo's landing page and select "manage topics."