Pipeline for analyzing drug resistance markers from Plasmodium microhaplotype data. It translates variants into amino acid changes at drug resistance loci and estimates allele frequencies and prevalences at both single-locus and multi-locus levels. Microhaplotype data can be supplied in the form of an allele table or a PMO file.
workflow pipeline genomics nextflow haplotypes population-genetics phasing frequency-estimation drug-resistance nf-core plasmodium plasmodium-falciparum prevalence-estimation multi-locus
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Updated
Aug 14, 2026 - Nextflow