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method-language-model

Here are 4 public repositories matching this topic...

Scindices / annacarbery--binding-sites

IF-SitePred is a method for predicting ligand-binding sites on protein structures. It first generates an embedding for each residue of the protein using the ESM-IF1 (inverse folding) model, then performs point cloud clustering to identify binding site centers.

lang-python status-archived interface-cli method-deep-learning role-application domain-structural-biology entity-protein entity-small-molecule status-published scope-focused domain-drug-discovery task-binding-site method-language-model

Updated Mar 25, 2024
Python

Scindices / instadeepai--nucleotide-transformer

Foundation Models for Genomics & Transcriptomics

status-active lang-python domain-bioinformatics method-deep-learning role-framework interface-api interface-jupyter status-published scope-focused entity-nucleic-acid method-language-model task-sequence-analysis entity-sequence domain-genomics

Updated Feb 24, 2026
Jupyter Notebook

Scindices / microsoft--BioGPT

lang-python status-archived domain-bioinformatics interface-cli method-deep-learning role-application interface-api status-published scope-focused domain-drug-discovery method-language-model task-sequence-analysis entity-sequence

Updated Jul 25, 2024
Python

Scindices / Biohub--esm

status-active lang-python domain-bioinformatics interface-cli method-deep-learning role-framework domain-structural-biology entity-protein interface-api status-published scope-swissknife method-language-model task-sequence-analysis entity-sequence task-structure-prediction task-protein-design

Updated Jul 28, 2026
Jupyter Notebook

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