Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
Cell metabolism simulation with reinforcement learning — organelles survive, adapt, and compete using ATP, stress, and damage signals. Live dashboard included.
Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
Platform for further development of the Arabidopsis core metabolic model
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
Genome-scale metabolic reconstruction of Rhizophagus irregularis
Memote-created repository for Rhodosporidium toruloides model iRhto
Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana
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