fgbio

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Tools for working with genomic and high throughput sequencing data.

bioinformatics scala genomics ngs umi analyzing-genomic-data fgbio molecular-indexes

Recipes for Singularity

bioinformatics container singularity vcf cancer-genomics bam awscli singularity-recipe fgbio vcflib bamsurgeon oncokb-annotator scarhrd

Workflow for collapsing of standard binary alignment mapping file generated by MSK-ACCESS

workflow duplex ctdna cwl-workflow bam-collapsing msk-access fgbio

Typed dataclasses, readers, and writers for Riker, Picard, Fgumi, and Fgbio metrics files

picard bioinformatics metrics ngs qc riker dataclass fgbio fgumi

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