Ruppin Lab

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1. CSI-Microbes-identification CSI-Microbes-identification Public

   Code for the identification step for CSI-Microbes

   Python 31 8

2. CSI-Microbes-analysis CSI-Microbes-analysis Public

   The code for running the analysis component of CSI-Microbe

   Python 11 3

3. madhitter madhitter Public

   Python 8

4. drug.OnTarget drug.OnTarget Public

   Identifying drug targets by integrating large-scale drug and genetic screens.

   HTML 2

5. tcga-microbiome-prediction tcga-microbiome-prediction Public

   Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-seq sequencing data for 32 TCGA cancers (Poore et al. Nature 2…

   Python 18 9

6. scSigR scSigR Public

   Generate signature matrix from single cell data.

   R 12 8