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🟢 Approval recommended
No active review issues are identified, and the documentation changes clearly explain how to use SpatialData-derived expression tables with GSVA.
No open issues 🎉
What changed in this PR
Updates the spatial omics vignette to document using SpatialData objects from spatialdataR with GSVA by extracting their SingleCellExperiment tables.
Changes:
- Clarifies support for
SpatialExperimentinputs. - Documents extracting the first or a selected table from a
SpatialDataobject. - Explains that GSVA analyzes expression tables rather than spatial coordinates.
| File | Description |
|---|---|
vignettes/GSVA_spRNAseq.Rmd |
Adds guidance for using spatialdataR tables as GSVA inputs and refines the spatial omics documentation. |
This pull request is ready to be approved.
Review effort: Lite
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