Repositories list

• MESSI-pipeline

  Public
  MESSI - Multimodal Experiments with SyStematic Interrogation in nextflow

  pythonshelldocker+ 7

  pythonshelldockermachine-learningrdeep-learningnextflowmultimodalnextflow-pipelineapptainer

  R

  •

  MIT License

  •00 forks•44 stars•2626 issues•11 pull request•Updated Oct 9, 2026Oct 9, 2026

• SORAT

  Public
  Cardiac Automated Segmentation & Comparison

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2026Oct 9, 2026

• dysf_mirna

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 10, 2026Sep 10, 2026

• caretMultimodal

  Public
  Multimodal late fusion in R

  R

  •

  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 10, 2026Sep 10, 2026

• BINN_experiments

  Public
  Training Lib for BINN

  HTML

  •00 forks•00 stars•55 issues•00 pull requests•Updated Aug 10, 2026Aug 10, 2026

• AbsoluteSmooth

  Public
  OmniPath network smoothing of absolute limma statistics for pathway perturbation analysis and external validation

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 31, 2026Jul 31, 2026

• cytokineFindeR

  Public
  This is the R package developed for various regression methods for inferring cytokine activity using transcriptomic data and LRI databases

  R

  •

  GNU General Public License v3.0

  •00 forks•44 stars•22 issues•00 pull requests•Updated Jun 8, 2026Jun 8, 2026

• smbpls_2026

  Public
  Sparse Multi-Block Partial Least Squares Algorithm

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• asthma_LAR-mRNA_biomarkers

  Public
  HTML

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 4, 2026Apr 4, 2026

• MESSI_manuscript

  Public
  Repo to store figures for submitting MESSI

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• VisiumVisualizations

  Public
  R

  •00 forks•11 star•22 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• scd_multimodal_litreview

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 7, 2026Feb 7, 2026

• omicsBioAnalytics

  Public
  R

  •00 forks•00 stars•00 issues•11 pull request•Updated Dec 2, 2025Dec 2, 2025

• cytokinefinder_analysis

  Public
  This is a repository intended to show all of the analyses done for the cytokineFindeR manuscript

  R

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 30, 2025Sep 30, 2025

• omics-bioanalytics-alexa-skill

  Public
  Companion Alexa Skill for the Omics BioAnalytics R Shiny web app

  JavaScript

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 1, 2025Aug 1, 2025

• simulation_multiomics_data

  Public
  R

  •

  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 15, 2025Jul 15, 2025

• bcg_skinblood_crosstalk

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 30, 2025Jun 30, 2025

• bulk_rnaseq_tutorial

  Public
  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 25, 2025Jan 25, 2025

• bruno

  Public
  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 9, 2025Jan 9, 2025

• bruno_paper

  Public
  Jupyter Notebook

  •00 forks•00 stars•99 issues•11 pull request•Updated Jan 7, 2025Jan 7, 2025

• Fentanyl_Multiomics

  Public
  HTML

  •00 forks•00 stars•66 issues•00 pull requests•Updated Aug 1, 2024Aug 1, 2024

• reproducible_analysis_demo_sccoda

  Public
  R

  •00 forks•00 stars•00 issues•11 pull request•Updated Oct 26, 2023Oct 26, 2023

• CompBio-Lab.github.io

  Public
  R

  •00 forks•00 stars•55 issues•00 pull requests•Updated Aug 7, 2023Aug 7, 2023

• geomx2rna

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•1010 issues•11 pull request•Updated Jun 2, 2023Jun 2, 2023