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Pull requests: nf-core/modules

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188 Open 8,814 Closed
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Pull requests list

Guard against running on an empty per-sample input list in tximport/quantify_rsem
#12378 opened Jul 15, 2026 by pinin4fjords Member Loading…
3 tasks done
Add new module: octopusv/plotcircos Ready for Review
#12374 opened Jul 15, 2026 by manascripts Member Loading…
12 of 17 tasks
6
New module: Treerecs
#12371 opened Jul 15, 2026 by leapicard Loading…
12 of 17 tasks
1
16
Added support for Cleanifier tool: cleanifier/download, cleanifier/index and cleanifier/filter new module Adding a new module
#12360 opened Jul 14, 2026 by LeonHornich Contributor Loading…
12 of 14 tasks
7
New module: angsd/dosaf
#12359 opened Jul 14, 2026 by ASendellPrice Contributor Loading…
12 of 14 tasks
1
@ASendellPrice
11
Fix strict syntax in utils_* subworkflows
#12329 opened Jul 9, 2026 by itrujnara Contributor Loading…
2 of 4 tasks
6
feat (closes #7246): add new component: leafcutter/differentialsplicing
#12271 opened Jul 7, 2026 by JTL-lab Contributor Loading…
14 of 17 tasks
1
6
Update to topic metaspace/*
#12247 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
2
Update to topic metamaps/*
#12246 opened Jul 6, 2026 by LouisLeNezet Contributor Loading…
17 tasks
2
@LouisLeNezet
6
new module: fastaguard awaiting-changes will be closed after 30 days
#12239 opened Jul 3, 2026 by ehsanestaji Contributor Loading…
14 of 15 tasks
17
Add new subworkflow: ubam_align_minimap2 Ready for Review
#12238 opened Jul 3, 2026 by manascripts Member Loading…
7 of 17 tasks
Update deacon module awaiting-changes will be closed after 30 days draft
#12236 opened Jul 3, 2026 by sofstam Contributor Loading…
17 tasks
Add subworkflow: fastq_align_minimap2 Ready for Review size/m
#12235 opened Jul 3, 2026 by manascripts Member Loading…
8 of 17 tasks
gstama_polyacleanup: Fixed regression - Fixing output glob awaiting-changes will be closed after 30 days
#12228 opened Jul 2, 2026 by sguizard Contributor Loading…
3
Add ciri2 module draft
#12224 opened Jul 1, 2026 by razmia02 • Draft
17 tasks
Added nf-core module presto/pairseq awaiting-changes will be closed after 30 days
#12222 opened Jul 1, 2026 by Vivian0105 Contributor Loading…
17 tasks
2
Seqkit replace - fix #9647 and #9646 awaiting-changes will be closed after 30 days
#12213 opened Jul 1, 2026 by ammaraziz Contributor Loading…
1
1
Update: pangolin modules awaiting-changes will be closed after 30 days
#12211 opened Jul 1, 2026 by ammaraziz Contributor Loading…
7
Update dependency nextflow-io/nextflow to v25.10.6 size/xs
#12210 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
Update mcr.microsoft.com/dotnet/runtime:9.0 Docker digest to e64ff42 size/xs
#12209 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
Pin nvcr.io/nvidia/tensorflow Docker tag to 9206ed8 size/xs
#12208 opened Jul 1, 2026 by renovate Bot Loading…
2 tasks
feat: add vcontact3/run module awaiting-changes will be closed after 30 days
#12198 opened Jun 30, 2026 by JP-Bro Contributor Loading…
6 tasks done
1
14
Add new component: quarto/partial Ready for Review
#12187 opened Jun 29, 2026 by fasterius Contributor Loading…
11 of 13 tasks
Mirtrace topics migration awaiting-changes will be closed after 30 days
#12183 opened Jun 26, 2026 by EfraMP Member Loading…
8 of 17 tasks
1
new module: cellpheno/nis awaiting-changes will be closed after 30 days
#12179 opened Jun 26, 2026 by Chrisa142857 Member Loading…
9 of 12 tasks
1
14
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