🧬 Building AI-driven Computational Methods for Precision Medicine

I am a Senior Research Scientist specializing in Computational Biology, Bioinformatics, Artificial Intelligence, and Precision Medicine.

My research combines genomics, transcriptomics, multi-omics integration, machine learning, and large language models (LLMs) to transform complex biological data into actionable insights for biomarker discovery, therapeutic target identification, and AI-assisted drug discovery.

Currently, I work as a Bioinformatician at the University of Arkansas for Medical Sciences (UAMS), where I develop scalable NGS pipelines, AI-driven computational workflows, and reproducible bioinformatics systems using TCGA and CPTAC datasets to advance cancer genomics research.

My long-term vision is to build intelligent computational systems that bridge biology and artificial intelligence to accelerate scientific discovery and improve patient outcomes.

🧬 Computational Biology

🧬 Cancer Genomics

🧬 Precision Oncology

🧬 Bioinformatics

🧬 Multi-Omics Integration

💊 Drug Discovery

🤖 Artificial Intelligence

🧠 Machine Learning & Deep Learning

📚 Large Language Models (LLMs)

⚡ Agentic AI

☁️ Scientific Computing

Healthcare Data Engineering
│
├── NIH Clinical Trials Lakehouse
├── CDC Healthcare Streaming ETL
│

Bioinformatics
│
├── TCGA CPTAC Kafka
├── Synthetic Variant Calling
├── USAG1 Validation
│

Artificial Intelligence
│
├── Genomic Foundation Models
│

Research
│
├── TNBC AI Drug Discovery
├── RTK NRTK Project

✔ Hybrid-CORE

AI framework for rational drug combination discovery.

✔ RTK/NRTK

Discovery of compensatory kinase networks using TCGA.

✔ Biomedical Agentic RAG

LLM-powered biomedical evidence synthesis.

✔ Foundation Models

🏥 NIH Clinical Trials Lakehouse

Production healthcare data engineering platform

GitHub

https://github.com/mtariqi/nih-clinical-trials-lakehouse-pipeline

🌍 CDC Healthcare Streaming ETL

Healthcare streaming analytics pipeline

https://github.com/mtariqi/cdc-healthcare-streaming-etl-pipeline

🎯 TNBC Drug Discovery Pipeline

AI-driven precision oncology

https://github.com/mtariqi/tnbc-drug-discovery-pipeline

🧬 TCGA-CPTAC Kafka Platform

Large-scale cancer multi-omics

https://github.com/mtariqi/tcga-cptac-kafka-bioinformatics

🧪 Synthetic Variant Calling Benchmark

Next-generation sequencing benchmarking

https://github.com/mtariqi/synthetic-variant-calling-benchmark

🤖 Genomic Foundation Models

Transformer models for genomics

https://github.com/mtariqi/genomic-foundation-models

🦷 USAG1 Validation

Computational target validation

https://github.com/mtariqi/USAG1-Validation

• 🧬 AI for Precision Oncology
• 💊 Computational Drug Discovery
• 🧠 Foundation Models for Genomics
• 📚 Biomedical Large Language Models
• ⚡ Agentic AI for Scientific Discovery
• 🔬 Cancer Multi-Omics
• ☁️ Scalable Scientific Computing

MS Bioinformatics

MSc Molecular Biology

MS Biotechnology

BSc Biotechnology and Genetic Engineering

Johns Hopkins University

Health Informatics

University of Toronto

Business Analytics

Project Management

Advanced Data Science

Cloud Computing

• Agentic AI
• Foundation Models
• Multi-agent Systems
• Biomedical LLMs
• Causal AI

I welcome collaborations in

• Computational Biology
• Bioinformatics
• Precision Medicine
• Cancer Genomics
• Artificial Intelligence
• Drug Discovery
• Machine Learning
• Healthcare AI
• Scientific Software Development

LinkedIn

https://www.linkedin.com/in/mdtariqulscired

GitHub

https://github.com/mtariqi

Email

[email protected]

Healthcare Data Engineering │ ▼ Public Health Analytics │ ▼ Cancer Multi-omics │ ▼ AI Drug Discovery │ ▼ Foundation Models │ ▼ Agentic AI for Precision Medicine

"Transforming Biological Data into Intelligent Therapeutic Discovery"