Issues

• Update docs for VisCy Applications and fix project naming

  documentation
  Task

  mehta-lab/VisCy#495 · Filter by author srivarra opened on Aug 20, 2026
  

• viscy_data flips iohub's global zarr backend at import time (side effect breaks unrelated I/O)

  mehta-lab/VisCy#477 · Filter by author ieivanov opened on Jun 30, 2026

• EmbeddingWriter produces AnnData with duplicate obs_names

  maintenance
  Task

  mehta-lab/VisCy#475 · Filter by author srivarra opened on Jun 23, 2026
  

• Meet CZI open-source repo requirements

  documentationmaintenance
  Task

  mehta-lab/VisCy#474 · Filter by author srivarra opened on Jun 23, 2026
  1

  

• Adding a post analysis step for ndea

  mehta-lab/VisCy#470 · Filter by author srivarra opened on Jun 16, 2026
  2

  

• Add option for reflection TTA

  mehta-lab/VisCy#462 · Filter by author ieivanov opened on Jun 9, 2026

• Zarr codec decision

  mehta-lab/VisCy#448 · Filter by author edyoshikun opened on Jun 3, 2026

• Cross-package test-dep leak: viscy-data tests import viscy-transforms

  mehta-lab/VisCy#436 · Filter by author edyoshikun opened on May 23, 2026

• cytoland example imports upstream microssim — migrate to cubic.metrics

  good first issue
  mehta-lab/VisCy#431 · Filter by author alxndrkalinin opened on May 22, 2026

• Skip empty timepoints in prediction and normalization stats

  mehta-lab/VisCy#422 · Filter by author tayllatheodoro opened on May 11, 2026

• Rendering static html pages hosted on s3 bucket via this repository

  mehta-lab/VisCy#421 · Filter by author mattersoflight opened on May 6, 2026

• Checkpoint Logging

  enhancement
  mehta-lab/VisCy#420 · Filter by author edyoshikun opened on May 5, 2026

• Cytoland multichannel logging

  mehta-lab/VisCy#419 · Filter by author edyoshikun opened on May 5, 2026

• HCSDataModule: BadZipFile CRC error reading OZX with num_workers > 0 (fork-shared file descriptor race)

  mehta-lab/VisCy#417 · Filter by author alxndrkalinin opened on Apr 29, 2026

• DDP deadlock hazard: ThreadDataLoader(use_thread_workers=True) in TripletDataModule + dynaclr MultiExperimentDataModule

  bugrepresentation
  mehta-lab/VisCy#414 · Filter by author alxndrkalinin opened on Apr 26, 2026

• Training Data for DynaCLR

  mehta-lab/VisCy#380 · Filter by author daemonkillerr opened on Mar 9, 2026
  1

• Write DynaCLR predictions before PHATE computations

  mehta-lab/VisCy#369 · Filter by author Soorya19Pradeep opened on Feb 17, 2026
  3

  

• Embedding writer caches everything before writing to disk causing OOM errors on OPS datasets

  mehta-lab/VisCy#362 · Filter by author edyoshikun opened on Feb 11, 2026

• Fix normalization logic for per-timepoint transforms

  package:transforms
  Bug

  mehta-lab/VisCy#361 · Filter by author srivarra opened on Feb 4, 2026
  

• Modularize VisCy

  breakingmaintenance
  Task

  mehta-lab/VisCy#353 · Filter by author srivarra opened on Jan 14, 2026
  11

  

• Standalone transforms library

  mehta-lab/VisCy#348 · Filter by author ziw-liu opened on Dec 10, 2025
  3

  

• DynaCLR patch selection is too restrictive for smaller FOVs and large patch sizes

  enhancement
  mehta-lab/VisCy#338 · Filter by author edyoshikun opened on Nov 5, 2025
  

• Add integration tests for our DynaCLR pipline

  CIenhancement
  mehta-lab/VisCy#333 · Filter by author edyoshikun opened on Nov 3, 2025

• Logging the model configs using save_hyperparms

  documentationenhancement
  mehta-lab/VisCy#302 · Filter by author edyoshikun opened on Sep 17, 2025 · v0.4.1
  

• PC viewer issues

  bugrepresentation
  mehta-lab/VisCy#297 · Filter by author Soorya19Pradeep opened on Sep 11, 2025