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refactor(charge): rework charge-state search and ranking
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fix(charge): cap rdDetermineBonds so pathological species cannot hang
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feat(charge): report a terminated valence search as skipped
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feat(reference): flag species whose copies enumerate to different cha…
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chore: update binary fixture for Cells_YOXKUS
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chore: update binary fixture for Cells_YOXKUS
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feat(metal): add test variant for relative metal radius calculation a…
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feat(metal_os): update comparison logic and logging for metal oxidati…
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refactor: comment out coordination report generation and cells saving
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chore: update binary fixture for Cells_YOXKUS
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style: fix trailing whitespace and apply ruff format
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feat(hydrogen): enhance missing hydrogens detection for fullerenes
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remove App.ipynb
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chore: update binary fixture for Cells_YOXKUS
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feat(protonation_enumerator): macrocycle/fullerene routing + symmetri…
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Merge pull request #7 from lcmd-epfl/dev_update
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Fix AttributeError in correct_smiles_ligand
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