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bash, awk, sed, and small python scripts

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Name		Name	Last commit message	Last commit date
pymol		pymol
script_inspo		script_inspo
slurm		slurm
system		system
.gitignore		.gitignore
Cterm_truncator.sh		Cterm_truncator.sh
Cterm_truncator_boltz_batch.sh		Cterm_truncator_boltz_batch.sh
PAE_plotter.ipynb		PAE_plotter.ipynb
PAE_plotter.py		PAE_plotter.py
PAE_plotter_v2.py		PAE_plotter_v2.py
README.md		README.md
af2_fasta_format.sh		af2_fasta_format.sh
af3_json_format.sh		af3_json_format.sh
argparseboilerplate.py		argparseboilerplate.py
barplot_vertical.py		barplot_vertical.py
batch_plddt_plotter.py		batch_plddt_plotter.py
boltzfaa_chunker.sh		boltzfaa_chunker.sh
chai_plddt_rglob.py		chai_plddt_rglob.py
chai_scores_rglob.py		chai_scores_rglob.py
chunkerfaa.sh		chunkerfaa.sh
chunkerfaa_colabfoldsearch.sh		chunkerfaa_colabfoldsearch.sh
clean_fasta.sh		clean_fasta.sh
clustercounter.sh		clustercounter.sh
cntfa.sh		cntfa.sh
curate_clusters.sh		curate_clusters.sh
diamond_output2fasta.sh		diamond_output2fasta.sh
dir_chunker.sh		dir_chunker.sh
dir_renamer.sh		dir_renamer.sh
dna_from_gbk.py		dna_from_gbk.py
editor		editor
extract_dna_from_genbank_wrapper.sh		extract_dna_from_genbank_wrapper.sh
faa2tsv.sh		faa2tsv.sh
gbk_annotate_from_dict_batch.py		gbk_annotate_from_dict_batch.py
gbk_extract_region.py		gbk_extract_region.py
gbk_extract_region_batch.py		gbk_extract_region_batch.py
gbk_seqsize.py		gbk_seqsize.py
gbk_to_faa_batch.py		gbk_to_faa_batch.py
glog		glog
ipAE_extract.py		ipAE_extract.py
is_subset_in_table.sh		is_subset_in_table.sh
join_tsvs.sh		join_tsvs.sh
kofam_output_cleanup.sh		kofam_output_cleanup.sh
kungfu-fasta.md		kungfu-fasta.md
local_fullmmseqsclustering.sh		local_fullmmseqsclustering.sh
masstsv2faa.sh		masstsv2faa.sh
mmseqscluster.sh		mmseqscluster.sh
mmseqscluster2splitfasta.sh		mmseqscluster2splitfasta.sh
mmseqsfasta2splitfasta.py		mmseqsfasta2splitfasta.py
mmseqssearch.sh		mmseqssearch.sh
monomers2dimers_fastas.sh		monomers2dimers_fastas.sh
pae_alphafold3_v1.py		pae_alphafold3_v1.py
pae_alphafold3_v2.py		pae_alphafold3_v2.py
pae_boltz_plot_1.py		pae_boltz_plot_1.py
pae_boltz_plot_2.py		pae_boltz_plot_2.py
plot_fasta_hist.py		plot_fasta_hist.py
rename_file_extension.sh		rename_file_extension.sh
scrap.splitfasta.awk		scrap.splitfasta.awk
split_fastas.sh		split_fastas.sh
splitfaa.sh		splitfaa.sh
splitfaa_boltz.sh		splitfaa_boltz.sh
splitfaa_chai.sh		splitfaa_chai.sh
touchbashcli.sh		touchbashcli.sh
touchbigsh.sh		touchbigsh.sh
touchcpu.sh		touchcpu.sh
touchgpu.sh		touchgpu.sh
touchipynb.sh		touchipynb.sh
touchjupynote.sh		touchjupynote.sh
touchlabnote.sh		touchlabnote.sh
touchmpl.sh		touchmpl.sh
touchpy.sh		touchpy.sh
touchpycli.sh		touchpycli.sh
touchpycli_batch.sh		touchpycli_batch.sh
touchsmallsh.sh		touchsmallsh.sh
tsv2faa.sh		tsv2faa.sh
tsv2splitfaa.sh		tsv2splitfaa.sh
uniqgenomeids.sh		uniqgenomeids.sh
unwrap_fasta.sh		unwrap_fasta.sh
wrap2unwrapfaa.sh		wrap2unwrapfaa.sh
wrap_fasta.sh		wrap_fasta.sh

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