Stress Test Evaluation of Biomedical Word Embeddings

This repository contains the datasets from the paper "Stress Test Evaluation of Biomedical Word Embeddings".

Details

• All datasets are in IOB2 tag format.
• The acronym ST on the folders indicates that it is a Stress Test Set.
• We include 2 datasets for chemical NER (BC4CHEMD, BC5CDR-chem) and disease NER (NCBI-disease, BC5CDR-disease).

Citation

If you find this repository useful for your research, please consider citing our paper:

@inproceedings{araujo-etal-2021-stress,
    title = "Stress Test Evaluation of Biomedical Word Embeddings",
    author = "Araujo, Vladimir  and
      Carvallo, Andr{\'e}s  and
      Aspillaga, Carlos  and
      Thorne, Camilo  and
      Parra, Denis",
    booktitle = "Proceedings of the 20th Workshop on Biomedical Language Processing",
    month = jun,
    year = "2021",
    address = "Online",
    publisher = "Association for Computational Linguistics",
    url = "https://www.aclweb.org/anthology/2021.bionlp-1.13",
    pages = "119--125",
}