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Add docs and download script for corrected registration studies - #4

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uturkbey merged 1 commit into
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fix/corrected-reg-studies-download
Jul 13, 2026
Merged

Add docs and download script for corrected registration studies#4
uturkbey merged 1 commit into
mainfrom
fix/corrected-reg-studies-download

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What & why

Two defects were found in the published registration outputs on MR-RATE-coreg / MR-RATE-atlas: truncated .nii.gz in batch03-05, and empty/truncated archives in batch06/08/09 (reported here). Affected studies were re-registered from native-space MRI and re-uploaded, overwriting the zips on main. This PR adds the consumer-side tooling to pull the corrected files (a plain download.py re-run skips them, since the corrupt copies already exist locally).

Changes

  • scripts/hf/download_fixed_reg_studies.py: replaces stale local copies; verifies each zip against the repo by LFS SHA-256 (resumable) and clears extracted folders before re-download.
  • scripts/hf/fixed_truncated_reg_study_ids.json (batch03-05) and scripts/hf/fixed_corrupt_reg_study_ids.json (batch06/08/09): manifests, nested by derivative since coreg/atlas aren't symmetric.
  • docs/fixed_reg_studies.md: guide to both issues + how to obtain the fixes.

@uturkbey
uturkbey merged commit 5a499cd into main Jul 13, 2026
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@uturkbey
uturkbey deleted the fix/corrected-reg-studies-download branch July 13, 2026 21:33
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