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Brush's logfile option now writes structured, valid CSV logs that cover the whole run, without any third-party library. This PR also adds a guide notebook showing how to load and plot them. #72

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Brush's logfile option now writes structured, valid CSV logs that cover the whole run, without any third-party library. This PR also adds a guide notebook showing how to load and plot them. #72

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977779d
auxiliary functions to write logs to a csv file
gAldeia Sep 23, 2026
903ea37
refactored calculate_stats and improved log: run-id, per-island stats…
gAldeia Sep 23, 2026
e6589c9
simplification now logs every replacement it does
gAldeia Sep 23, 2026
85c2b2e
counting number of evaluations for logging
gAldeia Sep 23, 2026
dd63ce5
updated docstring for logfile parameter.
gAldeia Sep 23, 2026
7f54122
logging tests: valid structure, required columns, and proper reading
gAldeia Sep 23, 2026
62beab0
Cool notebook exploring all logfiles Brush generates
gAldeia Sep 23, 2026
7888f8c
random seed test: check if logfiles are identical
gAldeia Sep 23, 2026
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4 changes: 4 additions & 0 deletions .gitignore
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Expand Up @@ -233,3 +233,7 @@ Doxyfile
environment.lock.yml
refs/
docs/doxygen_build/

# log files generated by docs/guide/logging.ipynb (and brush's logfile option)
docs/guide/logs/
*_simplification_table
1 change: 1 addition & 0 deletions docs/guide/index.md
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Expand Up @@ -18,5 +18,6 @@ saving_loading_populations
locking_mechanism
switching_metrics
archive
logging
deap
```
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