[bioinfornatics]

Problem

Agent-authored tickets can hide the user problem and unresolved product decisions behind technical vocabulary and repeated work instructions.

Change

Put problem, expected outcome, limits, acceptance and open decisions before technical details in all seven contained ticket-authoring references. Align Plan, preserve task-specific restart inputs and native tracker fields, and distinguish stale-fact repair from scope changes. Add focused source regressions and a hypothetical ticket-repair scenario.

Verification and limits

• 199 source tests passed in the working tree before commit; initial unrelated dirty hunks were present.
• Payload inventory passed; all seven Skills passed official creator validation.
• Official scenario design: 7 scenarios, 0 errors, 0 warnings.
• Behavioral scenario NOT EXECUTED; no independent Judge or exact-candidate acceptance claimed.
• Existing product tickets and installed plugin unchanged.

Tracking

agentic-devlopment-2hr

Promotion

Source PR targets develop. Main promotion requires clean exact-source verification, independent maintainer approval and a generated-only PR; do not merge develop into main.