[jaempawi]

• Datasets that are uploaded but not yet shared now count as In hand on the inventory page instead of Reviewing.
• Removes the "ROSMAP snRNA-seq expanded" row. Its Synapse ID (syn57373409) is the MSSM PsychAD gene expression folder, so it listed PsychAD twice.
• MSSM PsychAD is marked In hand: it is on the AD Knowledge Portal and already downloadable. The lab name is dropped from its row.
• caQTL pages describe the data as the MIT snATAC-seq dataset (Xiong et al. 2023, syn52293417), which the released ROSMAP_snATAC_MIT_* results are built from.
• Removes the menu link to the deleted Consortium members page.
• Fills three FIXMEs:
  • ROSMAP DLPFC eQTL: removes an empty data-location section.
  • ROSMAP snRNA-seq pseudo-bulk: describes the CUIMC1 raw data from Fujita et al. 2024 (Nat Genet) and corrects the sequencing platform.
  • ROSMAP DLPFC proteomics: describes outlier removal and case classification from Johnson et al. 2020 (Nat Med).
• Matches the fSuSiE summary file name on the File formats page to Synapse.
• Documents FunGen_xQTL_single_context_top_loci_integrated.rds and FunGen_xQTL_AD_loci_context_method_summary.fsusie.rds on the File formats page (row units, coverage and column definitions), replacing the last two FIXMEs.
• Staging YAML updated for the Synapse rename of glycoprotein QTL files and folder from gpQTL to glycoQTL.