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add support for LD matrix and use better genotype readers - #610

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danielnachun merged 2 commits into
mainfrom
export_fix
Oct 22, 2026
Merged

danielnachun merged 2 commits into
mainfrom
export_fix

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@codecov

codecov Bot commented Oct 22, 2026 •

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Codecov Report

❌ Patch coverage is 99.51329% with 13 lines in your changes missing coverage. Please review.
✅ Project coverage is 98.66%. Comparing base (e8d5d2e) to head (714b38e).
⚠️ Report is 2 commits behind head on main.

Files with missing lines Patch % Lines
R/genotypeIo.R 99.35% 4 Missing ⚠️
R/LdStatistic.R 97.82% 3 Missing ⚠️
R/GenotypeHandle.R 96.42% 2 Missing ⚠️
R/jointSpecification.R 99.10% 2 Missing ⚠️
R/ctwasWrapper.R 92.30% 1 Missing ⚠️
R/jointEngine.R 99.36% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #610      +/-   ##
==========================================
+ Coverage   98.64%   98.66%   +0.01%     
==========================================
  Files          72       78       +6     
  Lines       36308    37188     +880     
==========================================
+ Hits        35816    36690     +874     
- Misses        492      498       +6     

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@danielnachun
danielnachun merged commit 9fba448 into main Oct 22, 2026
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