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@SBU-BMI

Department of Biomedical Informatics

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  1. wsinfer wsinfer Public

    🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    Python 87 14

  2. quip_cnn_segmentation quip_cnn_segmentation Public

    CNN based segmentation codes

    Python 48 17

  3. champkit champkit Public

    Benchmarking toolkit for patch-based histopathology image classification.

    Python 44 5

  4. quip_distro quip_distro Public

    JavaScript 32 16

  5. u24_lymphocyte u24_lymphocyte Public

    Python 32 21

  6. quip_cancer_segmentation quip_cancer_segmentation Public

    Python 17 4

Repositories

Showing 10 of 115 repositories
  • iipImage Public Forked from camicroscope/iipImage

    Containerized IIP

    SBU-BMI/iipImage's past year of commit activity
    C++ 0 BSD-3-Clause 7 0 0 Updated Sep 10, 2026
  • PathDB Public
    SBU-BMI/PathDB's past year of commit activity
    PHP 2 BSD-3-Clause 6 1 10 Updated Aug 5, 2026
  • cancer-data-bridge Public

    REST API bridge connecting caMicroscope, 3D Slicer, and MongoDB for cancer pathology image analysis.

    SBU-BMI/cancer-data-bridge's past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 0 Updated Apr 22, 2026
  • findapi Public

    Minimal REST interface to MongoDB — query, project, and paginate collections via URL params with no framework overhead

    SBU-BMI/findapi's past year of commit activity
    JavaScript 0 BSD-3-Clause 1 0 0 Updated Apr 22, 2026
  • ImageLoader Public
    SBU-BMI/ImageLoader's past year of commit activity
    Dockerfile 0 0 1 0 Updated Mar 31, 2026
  • SpinPath Public

    CLI tool to run specimen-level inference on whole slide images

    SBU-BMI/SpinPath's past year of commit activity
    Python 7 Apache-2.0 1 0 1 Updated Jan 13, 2025
  • hatch Public Forked from ebremer/hatch
    SBU-BMI/hatch's past year of commit activity
    Java 1 GPL-2.0 2 0 0 Updated Nov 5, 2024
  • wsinfer Public

    🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

    SBU-BMI/wsinfer's past year of commit activity
    Python 87 Apache-2.0 14 14 (7 issues need help) 0 Updated Jul 11, 2024
  • wsinfer-zoo Public

    Model zoo for WSInfer

    SBU-BMI/wsinfer-zoo's past year of commit activity
    Python 2 Apache-2.0 0 1 0 Updated Jul 9, 2024
  • quip_distro Public
    SBU-BMI/quip_distro's past year of commit activity
    JavaScript 32 BSD-3-Clause 16 6 3 Updated May 2, 2024
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