## Fine-mapping - [x] ABF - [x] SUSIE - [x] FINEMAP - [x] PolyFun-SUSIE - [x] PolyFun-FINEMAP - [x] PAINTOR (statistical finemapping) - [x] PAINTOR_annot (finemap with annotations as priors) - [x] PAINTOR_multi (jointly finemap between multiple ZSCORES) - [x] PAINTOR_multiancestry (finemap different multiple LD refs across multiple ZSCORES) - [ ] [**ANNORE**](https://academic.oup.com/hmg/advance-article/doi/10.1093/hmg/ddab210/6327575?login=true) - [ ] [**JLIM**](https://github.com/cotsapaslab/jlim) - [ ] [**CAFEH**](https://github.com/karltayeb/cafeh) - [ ] [**INFIMA**](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02450-8) - [ ] [**SparsePro**](https://www.biorxiv.org/content/10.1101/2021.10.04.463133v2.full) ## Colocalization/genetic correlation - [x] [**coloc v2.0**](https://github.com/chr1swallace/coloc) - [ ] [**coloc.susie**](https://github.com/chr1swallace/coloc) - [ ] [**LAVA**](https://www.nature.com/articles/s41588-022-01017-y) - [ ] [**HyPrColoc**](https://doi.org/10.1038/s41467-020-20885-8) ## Preprocessing/outlier detection - [x] COJO_stepwise - [x] COJO_conditional - [x] COJO_joint - [ ] [**SLALOM**](https://www.medrxiv.org/content/10.1101/2022.03.16.22272457v1)
Fine-mapping
Colocalization/genetic correlation
Preprocessing/outlier detection