Rewrite CANDy as an installable Python package (CLI + API) - #2

Merged

AlexWindels merged 7 commits into

mainfrom

package-upgrade

Aug 7, 2026

Commits on Aug 6, 2026

Rewrite CANDy as an installable Python package (CLI + API)

Alex Windels
and
claude
committed
192cb21
Bundle clustering/MSA/phylogenetics tools for a zero-dependency pip install

Alex Windels
and
claude
committed
eec917b
Fix real-world MMseqs2 failures on Windows found during manual testing

Alex Windels
and
claude
committed
7e57477

Commits on Aug 7, 2026

Fix Gemini curation default model and add --curation-model override

Alex Windels
and
claude
committed
e44b836
Prepare v3.0.0 for PyPI release

Alex Windels
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claude
committed
c8dccab
Fail fast with a clear message on invalid CAZy family codes

Alex Windels
and
claude
committed
7cdea36
Fix CI-only test failure from ANSI codes in Typer's error panel

Alex Windels
and
claude
committed
ca6367c