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fix visualization code and reorganize repository - #146

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superwhiskers wants to merge 4 commits into
developfrom
visualization-fix
Open

superwhiskers wants to merge 4 commits into
developfrom
visualization-fix

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@superwhiskers

@superwhiskers superwhiskers commented Oct 15, 2026 •

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Merge request type

  • New feature
  • Resolves bug
  • Documentation
  • Other

Relates to

  • OPFLOW
  • SOPFLOW
  • SCOPFLOW
  • TCOPFLOW
  • CMake build system
  • Spack configuration
  • Manual
  • Web docs
  • Other

This MR updates

  • Header files
  • Source code
  • CMake build system
  • Spack configuration
  • Web docs
  • Manual
  • Other

Summary

  • changes configuration defaults in some places in the visualization code
    • also reflected in agentigrid in some places (i.e. use default if temperature is not provided)
  • provide links to datafiles in agentigrid directory so the user does not need to manually set them up
  • update documentation
  • fix visualization code
  • update layout to be better (per Simplify ExaGO/AgentiGrid installation directory structure #145)

closes #145

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Simplify ExaGO/AgentiGrid installation directory structure

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