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Remediate the emSign CA incident - #11
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Thomas A Caswell (tacaswell) wants to merge 3 commits into
Open
Thomas A Caswell (tacaswell) wants to merge 3 commits into
Thomas A Caswell (tacaswell) wants to merge 3 commits into
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Pixi 0.82.1 is the release fixed for the emSign CA incident. - pixi.toml: requires-pixi None -> '>=0.82.1' (added)
Update the locked packages to versions fixed for the emSign CA incident.
Raise the floors in pixi.toml:
- dependencies.pip: '>=25.2,<26' -> '>=26.2.2' (dropped the upper bound <26, which excluded the fixed version)
Output of `pixi update --manifest-path pixi.toml ca-certificates certifi pip`:
╭─ Running build for recipe: gsas-ii-2.0.0-hb0f4dca_0
│
│ ╭─ Fetching source code
│ │ No sources to fetch
│ │
│ ╰─────────────────── (took 0 seconds)
│
│ ╭─ Externally resolved dependencies recipe: gsas-ii-2.0.0-hb0f4dca_0
│ │
│ │ Resolved build dependencies(gsas-ii-2.0.0-hb0f4dca_0):
│ │ ╭─────────┬──────┬─────────┬───────┬─────────┬──────╮
│ │ │ Package ┆ Spec ┆ Version ┆ Build ┆ Channel ┆ Size │
│ │ ╞═════════╪══════╪═════════╪═══════╪═════════╪══════╡
│ │ ╰─────────┴──────┴─────────┴───────┴─────────┴──────╯
│ │ Resolved host dependencies(gsas-ii-2.0.0-hb0f4dca_0):
│ │ ╭──────────────────────────┬──────────────────────────────────┬────────────┬──────────────────────┬─────────────┬────────────╮
│ │ │ Package ┆ Spec ┆ Version ┆ Build ┆ Channel ┆ Size │
│ │ ╞══════════════════════════╪══════════════════════════════════╪════════════╪══════════════════════╪═════════════╪════════════╡
│ │ │ cython ┆ cython >=3.0.11,<4 ┆ 3.2.9 ┆ py313hc80a56d_0 ┆ conda-forge ┆ 3.59 MiB │
│ │ │ gcc ┆ gcc ┆ 16.1.0 ┆ hc6a0c74_2 ┆ conda-forge ┆ 28.58 KiB │
│ │ │ gfortran ┆ gfortran ┆ 16.1.0 ┆ hc6a0c74_2 ┆ conda-forge ┆ 28.06 KiB │
│ │ │ meson-python ┆ meson-python >=0.17.1,<0.18 ┆ 0.17.1 ┆ pyh70fd9c4_1 ┆ conda-forge ┆ 72.53 KiB │
│ │ │ ninja ┆ ninja >=1.12.1,<2 ┆ 1.13.2 ┆ h171cf75_1 ┆ conda-forge ┆ 182.39 KiB │
│ │ │ numpy ┆ numpy >=2.2.1,<2.5.0 ┆ 2.4.6 ┆ py313hf6604e3_0 ┆ conda-forge ┆ 8.45 MiB │
│ │ │ pip ┆ pip >=24.3.1,<25 ┆ 24.3.1 ┆ pyh145f28c_2 ┆ conda-forge ┆ 1.18 MiB │
│ │ │ pkg-config ┆ pkg-config >=0.29.2,<0.30 ┆ 0.29.2 ┆ h7c397b8_1011 ┆ conda-forge ┆ 137.70 KiB │
│ │ │ pyproject-metadata ┆ pyproject-metadata >=0.9.0,<0.10 ┆ 0.9.1 ┆ pyhd8ed1ab_0 ┆ conda-forge ┆ 21.47 KiB │
│ │ │ python ┆ python >=3.10,<3.14 ┆ 3.13.15 ┆ hb101c97_101_cp313 ┆ conda-forge ┆ 35.75 MiB │
│ │ │ tomli ┆ tomli >=2.2.1,<3 ┆ 2.4.1 ┆ pyhcf101f3_0 ┆ conda-forge ┆ 21.06 KiB │
│ │ │ wheel ┆ wheel >=0.45.1,<0.46 ┆ 0.45.1 ┆ pyhd8ed1ab_1 ┆ conda-forge ┆ 61.46 KiB │
│ │ │ _openmp_mutex ┆ ┆ 4.5 ┆ 20_gnu ┆ conda-forge ┆ 28.27 KiB │
│ │ │ binutils_impl_linux-64 ┆ ┆ 2.46.1 ┆ default_hfdba357_102 ┆ conda-forge ┆ 3.54 MiB │
│ │ │ bzip2 ┆ ┆ 1.0.8 ┆ hda65f42_10 ┆ conda-forge ┆ 251.77 KiB │
│ │ │ ca-certificates ┆ ┆ 2026.10.19 ┆ hbd8a1cb_0 ┆ conda-forge ┆ 128.32 KiB │
│ │ │ conda-gcc-specs ┆ ┆ 16.1.0 ┆ h5a3cd76_2 ┆ conda-forge ┆ 31.63 KiB │
│ │ │ gcc_impl_linux-64 ┆ ┆ 16.1.0 ┆ hceef32b_2 ┆ conda-forge ┆ 81.09 MiB │
│ │ │ gfortran_impl_linux-64 ┆ ┆ 16.1.0 ┆ h08e1a1a_2 ┆ conda-forge ┆ 20.05 MiB │
│ │ │ icu ┆ ┆ 78.3 ┆ py310h44b86e0_2 ┆ conda-forge ┆ 13.79 MiB │
│ │ │ kernel-headers_linux-64 ┆ ┆ 4.18.0 ┆ he073ed8_9 ┆ conda-forge ┆ 1.22 MiB │
│ │ │ ld_impl_linux-64 ┆ ┆ 2.46.1 ┆ default_hbd61a6d_102 ┆ conda-forge ┆ 727.83 KiB │
│ │ │ libblas ┆ ┆ 3.11.0 ┆ 9_h4a7cf45_openblas ┆ conda-forge ┆ 17.61 KiB │
│ │ │ libcblas ┆ ┆ 3.11.0 ┆ 9_h0358290_openblas ┆ conda-forge ┆ 17.58 KiB │
│ │ │ libexpat ┆ ┆ 2.8.1 ┆ hecca717_1 ┆ conda-forge ┆ 76.03 KiB │
│ │ │ libffi ┆ ┆ 3.7.0 ┆ h3435931_0 ┆ conda-forge ┆ 65.99 KiB │
│ │ │ libgcc ┆ ┆ 16.1.0 ┆ ha9f2e26_2 ┆ conda-forge ┆ 1.01 MiB │
│ │ │ libgcc-devel_linux-64 ┆ ┆ 16.1.0 ┆ h59071f9_102 ┆ conda-forge ┆ 2.96 MiB │
│ │ │ libgfortran ┆ ┆ 16.1.0 ┆ h69a702a_2 ┆ conda-forge ┆ 27.59 KiB │
│ │ │ libgfortran5 ┆ ┆ 16.1.0 ┆ h79bb938_2 ┆ conda-forge ┆ 2.42 MiB │
│ │ │ libgomp ┆ ┆ 16.1.0 ┆ he0feb66_2 ┆ conda-forge ┆ 625.46 KiB │
│ │ │ liblapack ┆ ┆ 3.11.0 ┆ 9_h47877c9_openblas ┆ conda-forge ┆ 17.60 KiB │
│ │ │ liblzma ┆ ┆ 5.8.3 ┆ hb03c661_1 ┆ conda-forge ┆ 110.35 KiB │
│ │ │ libmpdec ┆ ┆ 4.0.0 ┆ hb03c661_2 ┆ conda-forge ┆ 90.58 KiB │
│ │ │ libopenblas ┆ ┆ 0.3.34 ┆ pthreads_h94d23a6_0 ┆ conda-forge ┆ 5.68 MiB │
│ │ │ libsanitizer ┆ ┆ 16.1.0 ┆ hf2715c6_2 ┆ conda-forge ┆ 7.59 MiB │
│ │ │ libsqlite ┆ ┆ 3.53.4 ┆ h13e7031_1 ┆ conda-forge ┆ 951.51 KiB │
│ │ │ libstdcxx ┆ ┆ 16.1.0 ┆ h934c35e_2 ┆ conda-forge ┆ 6.32 MiB │
│ │ │ libstdcxx-devel_linux-64 ┆ ┆ 16.1.0 ┆ h41cdd0d_102 ┆ conda-forge ┆ 22.39 MiB │
│ │ │ libuuid ┆ ┆ 2.42.2 ┆ h5347b49_0 ┆ conda-forge ┆ 39.08 KiB │
│ │ │ libzlib ┆ ┆ 1.3.2 ┆ h25fd6f3_3 ┆ conda-forge ┆ 62.22 KiB │
│ │ │ meson ┆ ┆ 1.12.0 ┆ pyhcf101f3_0 ┆ conda-forge ┆ 777.97 KiB │
│ │ │ ncurses ┆ ┆ 6.6 ┆ hdb14827_1 ┆ conda-forge ┆ 889.84 KiB │
│ │ │ openssl ┆ ┆ 3.6.3 ┆ h35e630c_1 ┆ conda-forge ┆ 3.03 MiB │
│ │ │ packaging ┆ ┆ 26.3 ┆ pyhc364b38_0 ┆ conda-forge ┆ 113.64 KiB │
│ │ │ python_abi ┆ ┆ 3.13 ┆ 8_cp313 ┆ conda-forge ┆ 6.84 KiB │
│ │ │ readline ┆ ┆ 8.3 ┆ hd6e31c0_1 ┆ conda-forge ┆ 340.72 KiB │
│ │ │ sysroot_linux-64 ┆ ┆ 2.28 ┆ h4ee821c_9 ┆ conda-forge ┆ 22.90 MiB │
│ │ │ tk ┆ ┆ 8.6.13 ┆ noxft_hd70dff1_3 ┆ conda-forge ┆ 3.39 MiB │
│ │ │ tzdata ┆ ┆ 2026c ┆ h151e31d_0 ┆ conda-forge ┆ 116.06 KiB │
│ │ │ zstd ┆ ┆ 1.5.7 ┆ hb78ec9c_7 ┆ conda-forge ┆ 587.21 KiB │
│ │ ╰──────────────────────────┴──────────────────────────────────┴────────────┴──────────────────────┴─────────────┴────────────╯
│ │ Resolved run dependencies(gsas-ii-2.0.0-hb0f4dca_0):
│ │ ╭──────────────────┬───────────────────────────────────────╮
│ │ │ Name ┆ Spec │
│ │ ╞══════════════════╪═══════════════════════════════════════╡
│ │ │ Run dependencies ┆ │
│ │ │ h5py ┆ >=3.12.1,<4 │
│ │ │ imageio ┆ >=2.36.1,<3 │
│ │ │ libgcc-ng ┆ * │
│ │ │ libgfortran5 ┆ * │
│ │ │ matplotlib-base ┆ >=3.10.0,<4 │
│ │ │ numpy ┆ >=2.2.1,<2.5.0 │
│ │ │ ┆ >=1.23,<3 (RE of [host: numpy]) │
│ │ │ pillow ┆ >=11.1.0,<12 │
│ │ │ pybaselines ┆ >=1.2.0,<2 │
│ │ │ pycifrw ┆ >=4.4.0 │
│ │ │ pyopengl ┆ >=3.1.6,<4 │
│ │ │ python ┆ >=3.10 │
│ │ │ python_abi ┆ 3.13.* *_cp313 (RE of [host: python]) │
│ │ │ requests ┆ >=2.32.3,<3 │
│ │ │ scipy ┆ >=1.15.0,<2 │
│ │ │ seekpath ┆ >=2.1.0,<3 │
│ │ │ wxpython ┆ >=4.2.2,<5 │
│ │ │ xmltodict ┆ >=0.14.2,<0.15 │
│ │ │ zarr ┆ >=2.18.3,<4 │
│ │ ╰──────────────────┴───────────────────────────────────────╯
│ │
│ ╰─────────────────── (took 0 seconds)
│
│ ╭─ Running build script
│ │ + $PREFIX/bin/python -m pip install --force-reinstall -vv --no-deps --no-build-isolation --no-index /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5
│ │ aaabe581fe7dd5/e0910fc1
│ │ Using pip 24.3.1 from $PREFIX/lib/python3.13/site-packages/pip (python 3.13)
│ │ Non-user install because user site-packages disabled
│ │ Ignoring indexes: https://pypi.org/simple
│ │ Created temporary directory: /tmp/pip-build-tracker-hdmjkcbn
│ │ Initialized build tracking at /tmp/pip-build-tracker-hdmjkcbn
│ │ Created build tracker: /tmp/pip-build-tracker-hdmjkcbn
│ │ Entered build tracker: /tmp/pip-build-tracker-hdmjkcbn
│ │ Created temporary directory: /tmp/pip-install-_mfbjegu
│ │ Created temporary directory: /tmp/pip-ephem-wheel-cache-4hskxckz
│ │ Processing /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1
│ │ Added file:///home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1 to build tracker '/tmp/pip-build-tracker-hdmjkcbn'
│ │ Created temporary directory: /tmp/pip-modern-metadata-g6iuj96a
│ │ Preparing metadata (pyproject.toml): started
│ │ Running command Preparing metadata (pyproject.toml)
│ │ + meson setup /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1 /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe
│ │ 581fe7dd5/e0910fc1/.mesonpy-m6jcm80n -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/tcaswell/.cache/rattler/cache/git-v0/checko
│ │ uts/c5aaabe581fe7dd5/e0910fc1/.mesonpy-m6jcm80n/meson-python-native-file.ini
│ │ The Meson build system
│ │ Version: 1.12.0
│ │ Source dir: /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1
│ │ Build dir: /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/.mesonpy-m6jcm80n
│ │ Build type: native build
│ │ Project name: gsas_ii
│ │ Project version: 2.0.0
│ │ Fortran compiler for the host machine: gfortran (gcc 16.1.0 "GNU Fortran (conda-forge gcc 16.1.0-2) 16.1.0")
│ │ Fortran linker for the host machine: gfortran ld.bfd 2.46.1
│ │ C compiler for the host machine: /usr/bin/ccache cc (gcc 16.1.0 "cc (conda-forge gcc 16.1.0-2) 16.1.0")
│ │ C linker for the host machine: cc ld.bfd 2.46.1
│ │ Cython compiler for the host machine: cython (cython 3.2.9)
│ │ Host machine cpu family: x86_64
│ │ Host machine cpu: x86_64
│ │ Library m found: YES
│ │ ../meson.build:29: WARNING: Consider using the built-in optimization level instead of using "-O2".
│ │ Program python found: YES ($PREFIX/bin/python)
│ │ Found pkg-config: YES ($PREFIX/bin/pkg-config) 0.29.2
│ │ Run-time dependency python found: YES 3.13
│ │ numpy-config found: YES ($PREFIX/bin/numpy-config) 2.4.6
│ │ Run-time dependency numpy found: YES 2.4.6
│ │ Build targets in project: 19
│ │ gsas_ii 2.0.0
│ │ User defined options
│ │ Native files: /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/.mesonpy-m6jcm80n/meson-python-native-file.ini
│ │ b_ndebug : if-release
│ │ b_vscrt : md
│ │ buildtype : release
│ │ Found ninja-1.13.2 at $PREFIX/bin/ninja
│ │ + $PREFIX/bin/ninja
│ │ [1/134] Scanning target convcell for modules
│ │ [2/134] Scanning target DIFFaXsubs_lib for modules
│ │ [3/134] Scanning target pack_f.cpython-313-x86_64-linux-gnu for modules
│ │ [4/134] Scanning target pyspg.cpython-313-x86_64-linux-gnu for modules
│ │ [5/134] Scanning target pytexture.cpython-313-x86_64-linux-gnu for modules
│ │ [6/134] Scanning target powsubs_lib for modules
│ │ [7/134] Scanning target pypowder.cpython-313-x86_64-linux-gnu for modules
│ │ [8/134] Scanning target spsubs_lib for modules
│ │ [9/134] Scanning target histogram2d.cpython-313-x86_64-linux-gnu for modules
│ │ [10/134] Scanning target NISTlatsubs_lib for modules
│ │ [11/134] Scanning target texturesubs_lib for modules
│ │ [12/134] Scanning target LATTIC for modules
│ │ [13/134] Scanning target unpack_cbf.cpython-313-x86_64-linux-gnu for modules
│ │ [14/134] Scanning target pydiffax.cpython-313-x86_64-linux-gnu for modules
│ │ [15/134] Generating dynamic dependency information for target convcell
│ │ [16/134] Generating dynamic dependency information for target DIFFaXsubs_lib
│ │ [17/134] Generating dynamic dependency information for target powsubs_lib
│ │ [18/134] Generating dynamic dependency information for target pypowder.cpython-313-x86_64-linux-gnu
│ │ [19/134] Generating dynamic dependency information for target pack_f.cpython-313-x86_64-linux-gnu
│ │ [20/134] Generating dynamic dependency information for target histogram2d.cpython-313-x86_64-linux-gnu
│ │ [21/134] Generating dynamic dependency information for target spsubs_lib
│ │ [22/134] Generating dynamic dependency information for target pyspg.cpython-313-x86_64-linux-gnu
│ │ [23/134] Generating dynamic dependency information for target pydiffax.cpython-313-x86_64-linux-gnu
│ │ [24/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_acosd.for.o
│ │ [25/134] Compiling C object sources/pytexture.cpython-313-x86_64-linux-gnu.so.p/pytexturemodule.c.o
│ │ [26/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_cosd.for.o
│ │ [27/134] Compiling C object sources/pack_f.cpython-313-x86_64-linux-gnu.so.p/pack_fmodule.c.o
│ │ [28/134] Generating dynamic dependency information for target texturesubs_lib
│ │ [29/134] Generating dynamic dependency information for target NISTlatsubs_lib
│ │ [30/134] Generating dynamic dependency information for target pytexture.cpython-313-x86_64-linux-gnu
│ │ [31/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_hfunc.for.o
│ │ [32/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_expint.for.o
│ │ [33/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_lorentz.for.o
│ │ [34/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_CENTER.f.o
│ │ [35/134] Generating dynamic dependency information for target unpack_cbf.cpython-313-x86_64-linux-gnu
│ │ [36/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_epsvoigt.for.o
│ │ [37/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_gauleg.for.o
│ │ [38/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_gerfc.for.o
│ │ [39/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_psvoigt.for.o
│ │ [40/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HEAD4.f.o
│ │ [41/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HEAD0.f.o
│ │ [42/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_DETERM.f.o
│ │ [43/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_DERIV.f.o
│ │ [44/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_CKPT02.f.o
│ │ [45/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_DOT.f.o
│ │ [46/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_psvfcjo.for.o
│ │ [47/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HEAD3.f.o
│ │ [48/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_INVERS.f.o
│ │ [49/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HEAD2.f.o
│ │ [50/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_psvfcjexpo.for.o
│ │ [51/134] Compiling C object sources/histogram2d.cpython-313-x86_64-linux-gnu.so.p/histogram2dmodule.c.o
│ │ [52/134] Compiling C object sources/fmask.cpython-313-x86_64-linux-gnu.so.p/fmask.c.o
│ │ [53/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HEAD5.f.o
│ │ [54/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_MULTIP.f.o
│ │ [55/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_SET.f.o
│ │ [56/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_psvfcj.f90.o
│ │ [57/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_RD021.f.o
│ │ [58/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_QMATRI.f.o
│ │ [59/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_SHORTV.f.o
│ │ [60/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_RD061.f.o
│ │ [61/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HEAD6.f.o
│ │ [62/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_SPCON2.f.o
│ │ [63/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_OUTPT2.f.o
│ │ [64/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_sind.for.o
│ │ [65/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_REDUCE.f.o
│ │ [66/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_VOLUME.f.o
│ │ [67/134] Compiling Fortran object sources/libpowsubs_lib.a.p/powsubs_tand.for.o
│ │ [68/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_NORMAL.f.o
│ │ [69/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_MNCOND.f.o
│ │ [70/134] Compiling C object sources/unpack_cbf.cpython-313-x86_64-linux-gnu.so.p/unpack_cbfmodule.c.o
│ │ [71/134] Compiling Fortran object sources/libspsubs_lib.a.p/spsubs_sglpak.for.o
│ │ [72/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_OUTPT1.f.o
│ │ [73/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_SPCOND.f.o
│ │ [74/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_RD051.f.o
│ │ [75/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_TRANS.f.o
│ │ [76/134] Compiling Fortran object sources/libspsubs_lib.a.p/spsubs_sglcen.for.o
│ │ [77/134] Compiling Fortran object sources/libNISTlatsubs_lib.a.p/NISTlatsubs_HMATRX.f.o
│ │ [78/134] Compiling Fortran object sources/libspsubs_lib.a.p/spsubs_sgoprn.for.o
│ │ [79/134] Compiling Fortran object sources/libtexturesubs_lib.a.p/texturesubs_factln.for.o
│ │ [80/134] Compiling Fortran object sources/libspsubs_lib.a.p/spsubs_sgmtml.for.o
│ │ [81/134] Compiling Fortran object sources/libtexturesubs_lib.a.p/texturesubs_cosd.for.o
│ │ [82/134] Compiling Fortran object sources/libspsubs_lib.a.p/spsubs_sgrmat.for.o
│ │ [83/134] Linking static target sources/libNISTlatsubs_lib.a
│ │ [84/134] Compiling C object sources/pyspg.cpython-313-x86_64-linux-gnu.so.p/pyspgmodule.c.o
│ │ [85/134] Compiling Fortran object sources/libtexturesubs_lib.a.p/texturesubs_sind.for.o
│ │ [86/134] Compiling Fortran object sources/libtexturesubs_lib.a.p/texturesubs_aplms.for.o
│ │ [87/134] Linking static target sources/libpowsubs_lib.a
│ │ [88/134] Compiling Fortran object sources/libspsubs_lib.a.p/spsubs_sgtrcf.for.o
│ │ [89/134] Compiling Fortran object sources/pypowder.cpython-313-x86_64-linux-gnu.so.p/pypowder-f2pywrappers.f.o
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│ │ [100/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2phase_RRUFF.py
│ │ [101/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2phase_xyz.py
│ │ [102/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_BrukerBRML.py
│ │ [103/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_BrukerRAW.py
│ │ [104/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_CIF.py
│ │ [105/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_FP.py
│ │ [106/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_GPX.py
│ │ [107/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_HDF5.py
│ │ [108/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_MIDAS.py
│ │ [109/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_Panalytical.py
│ │ [110/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_csv.py
│ │ [111/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_fxye.py
│ │ [112/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_rigaku.py
│ │ [113/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2pwd_xye.py
│ │ [114/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2rfd_Panalytical.py
│ │ [115/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2rfd_rigaku.py
│ │ [116/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2rfd_xye.py
│ │ [117/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2sad_xye.py
│ │ [118/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2sfact.py
│ │ [119/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/imports/G2sfact_CIF.py
│ │ [120/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_Bracket.py
│ │ [121/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_CIF.py
│ │ [122/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_FIT2D.py
│ │ [123/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_JSON.py
│ │ [124/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_PDB.py
│ │ [125/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_csv.py
│ │ [126/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_examples.py
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│ │ [129/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_pwdr.py
│ │ [130/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/G2export_shelx.py
│ │ [131/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/__init__.py
│ │ [132/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/cif_core.cpickle
│ │ [133/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/cif_core.dic
│ │ [134/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/cif_pd.cpickle
│ │ [135/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/cif_pd.dic
│ │ [136/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/template_phase.cif
│ │ [137/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/template_powder.cif
│ │ [138/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/template_publ.cif
│ │ [139/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/exports/template_single.cif
│ │ [140/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/darrow.ico
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│ │ [144/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/gsas2.ico
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│ │ [146/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/gsas2mac.ico
│ │ [147/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/help.ico
│ │ [148/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/key.ico
│ │ [149/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/larrow.ico
│ │ [150/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/publish.ico
│ │ [151/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/rarrow.ico
│ │ [152/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/sxarrow.ico
│ │ [153/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/syarrow.ico
│ │ [154/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/icons/uarrow.ico
│ │ [155/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIElem.py
│ │ [156/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIElemGUI.py
│ │ [157/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIImiscGUI.py
│ │ [158/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIIntPDFtool.py
│ │ [159/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIconstrGUI.py
│ │ [160/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIctrlGUI.py
│ │ [161/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIdata.py
│ │ [162/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIdataGUI.py
│ │ [163/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIddataGUI.py
│ │ [164/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIexprGUI.py
│ │ [165/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIfiles.py
│ │ [166/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIfpaGUI.py
│ │ [167/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIimage.py
│ │ [168/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIimgGUI.py
│ │ [169/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIindex.py
│ │ [170/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIlattice.py
│ │ [171/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIImapvars.py
│ │ [172/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIImath.py
│ │ [173/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIImpsubs.py
│ │ [174/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIobj.py
│ │ [175/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIpath.py
│ │ [176/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIphsGUI.py
│ │ [177/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIplot.py
│ │ [178/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIpwd.py
│ │ [179/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIpwdGUI.py
│ │ [180/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIpwdplot.py
│ │ [181/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIrestrGUI.py
│ │ [182/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIsasd.py
│ │ [183/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIscriptable.py
│ │ [184/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIseqGUI.py
│ │ [185/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIspc.py
│ │ [186/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIstrIO.py
│ │ [187/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIstrMain.py
│ │ [188/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIIstrMath.py
│ │ [189/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/GSASIItestplot.py
│ │ [190/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/backcompat/ElementTable.py
│ │ [191/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/DefaultExpressions.txt
│ │ [192/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/OriginTemplate2.otpu
│ │ [193/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/versioninfo.txt
│ │ [194/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/Xsect.dat
│ │ [195/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/angles-resrb.mac
│ │ [196/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/angles.mac
│ │ [197/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/bonds-resrb.mac
│ │ [198/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/bonds.mac
│ │ [199/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/chiral.mac
│ │ [200/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/planes-resrb.mac
│ │ [201/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/planes.mac
│ │ [202/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/ramachandran.mac
│ │ [203/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/residue-rb.mac
│ │ [204/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/GSASII/inputs/GSASIImacros/torsion.mac
│ │ [205/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/.mesonpy-m6jcm80n/sources/convcell
│ │ [206/206] /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1/.mesonpy-m6jcm80n/sources/LATTIC
│ │ Preparing metadata (pyproject.toml): finished with status 'done'
│ │ Source in /home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1 has version 2.0.0, which satisfies requirement GSAS-II==2.0.0 fr
│ │ om file:///home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1
│ │ Removed GSAS-II==2.0.0 from file:///home/tcaswell/.cache/rattler/cache/git-v0/checkouts/c5aaabe581fe7dd5/e0910fc1 from build tracker '/tmp/pip-build-trac
│ │ ker-hdmjkcbn'
│ │ Created temporary directory: /tmp/pip-unpack-ez3f799h
│ │ Building wheels for collected packages: GSAS-II
│ │ Created temporary directory: /tmp/pip-wheel-yc3x9jsz
│ │ Destination directory: /tmp/pip-wheel-yc3x9jsz
│ │ Building wheel for GSAS-II (pyproject.toml): started
│ │ Running command Building wheel for GSAS-II (pyproject.toml)
│ │ Building wheel for GSAS-II (pyproject.toml): finished with status 'done'
│ │ Created wheel for GSAS-II: filename=gsas_ii-2.0.0-cp313-cp313-linux_x86_64.whl size=2856629 sha256=43bda054ce292b676d05be9fdba4136188e3b0fc173228f6485cf2
│ │ f19895d184
│ │ Stored in directory: /tmp/pip-ephem-wheel-cache-4hskxckz/wheels/a9/e3/1e/f3b6886d637460f6954dd6b389da58229e8fd2ddefabad2559
│ │ Successfully built GSAS-II
│ │ Installing collected packages: GSAS-II
│ │ changing mode of $PREFIX/bin/GSAS-II to 755
│ │ Successfully installed GSAS-II-2.0.0
│ │ Removed build tracker: '/tmp/pip-build-tracker-hdmjkcbn'
│ │
│ ╰─────────────────── (took 9 seconds)
│
│ ╭─ Packaging new files
│ │ Copying done!
│ │ Relinking "pack_f.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "pytexture.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "fmask.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "pydiffax.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "pyspg.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "histogram2d.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "convcell"
│ │ Relinking "LATTIC"
│ │ Relinking "kvec_general.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "unpack_cbf.cpython-313-x86_64-linux-gnu.so"
│ │ Relinking "pypowder.cpython-313-x86_64-linux-gnu.so"
│ │
│ │ [lib/python3.13/site-packages/GSASII/kvec_general.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ libm.so.6
│ │ └─ libc.so.6
│ │
│ │ [lib/python3.13/site-packages/GSASII/histogram2d.cpython-313-x86_64-linux-gnu.so] links against:
│ │ └─ libc.so.6
│ │
│ │ [lib/python3.13/site-packages/GSASII/pydiffax.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ libm.so.6
│ │ ├─ libc.so.6
│ │ ├─ lib/libgfortran.so.5.0.0 (libgfortran5)
│ │ └─ libmvec.so.1
│ │
│ │ [lib/python3.13/site-packages/GSASII/fmask.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ libc.so.6
│ │ └─ libm.so.6
│ │
│ │ [bin/LATTIC] links against:
│ │ ├─ libm.so.6
│ │ ├─ libc.so.6
│ │ └─ lib/libgfortran.so.5.0.0 (libgfortran5)
│ │
│ │ [lib/python3.13/site-packages/GSASII/pack_f.cpython-313-x86_64-linux-gnu.so] links against:
│ │ └─ libc.so.6
│ │
│ │ [bin/convcell] links against:
│ │ ├─ lib/libgfortran.so.5.0.0 (libgfortran5)
│ │ ├─ libc.so.6
│ │ └─ libm.so.6
│ │
│ │ [lib/python3.13/site-packages/GSASII/unpack_cbf.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ libc.so.6
│ │ └─ lib/libgfortran.so.5.0.0 (libgfortran5)
│ │
│ │ [lib/python3.13/site-packages/GSASII/pytexture.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ libm.so.6
│ │ └─ libc.so.6
│ │
│ │ [lib/python3.13/site-packages/GSASII/pypowder.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ lib/libgfortran.so.5.0.0 (libgfortran5)
│ │ ├─ libc.so.6
│ │ └─ libm.so.6
│ │
│ │ [lib/python3.13/site-packages/GSASII/pyspg.cpython-313-x86_64-linux-gnu.so] links against:
│ │ ├─ libc.so.6
│ │ ├─ lib/libgfortran.so.5.0.0 (libgfortran5)
│ │ └─ libm.so.6
│ │ Post-processing done!
│ │ Writing test files
│ │ Writing metadata for package
│ │ Copying license files
│ │ Copying recipe files
│ │
│ │ Files in package:
│ │ ├─ bin/GSAS-II (498 B) [prefix:text]
│ │ ├─ bin/LATTIC (82.38 KiB)
│ │ ├─ bin/convcell (31.05 KiB)
│ │ ├─ lib/python3.13/site-packages/ElementTable.py (205 B)
│ │ ├─ lib/python3.13/site-packages/GSASII/Absorb.py (27.82 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/Bilbao/BCS_API.py (29.87 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/Bilbao/__pycache__/BCS_API.cpython-313.pyc (27.81 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/ElementTable.py (19.54 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/FormFactors.py (41.73 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/G2compare.py (36.34 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/G2shapes.py (64.55 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIElem.py (33.97 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIElemGUI.py (15.15 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIGUI.py (4.29 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIIntPDFtool.py (45.15 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIconstrGUI.py (201.91 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIctrlGUI.py (458.13 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIdata.py (146.13 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIdataGUI.py (476.50 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIddataGUI.py (73.24 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIexprGUI.py (41.83 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIfiles.py (111.46 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIfpaGUI.py (34.88 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIimage.py (87.25 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIimgGUI.py (226.94 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIindex.py (46.42 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIlattice.py (143.65 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIImapvars.py (91.17 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIImath.py (242.79 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIImiscGUI.py (60.22 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIImpsubs.py (11.32 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIobj.py (93.59 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIpath.py (98.73 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIphsGUI.py (671.68 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIphsGUI2.py (103.46 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIplot.py (379.92 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIpwd.py (259.23 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSASIIpwdGUI.py (502.70 KiB)
│ │ ├─ lib/python3.13/site-packages/GSASII/GSAS…
- .github/workflows/ci.yaml:33: prefix-dev/setup-pixi pixi-version v0.74.0 -> v0.83.0 - .github/workflows/ci.yaml:54: prefix-dev/setup-pixi pixi-version v0.74.0 -> v0.83.0 - .github/workflows/docs.yml:38: prefix-dev/setup-pixi pixi-version v0.74.0 -> v0.83.0
Contributor
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🟢 Approval recommended
The manifest requirements, lockfile updates, and workflow pins are consistent, with no blocking issues identified.
No open issues 🎉
What changed in this PR
This PR updates PowderLine’s dependency environment and CI tooling to address the emSign CA incident without changing application code.
Changes:
- Requires Pixi ≥0.82.1 and pip ≥26.2.2.
- Refreshes locked certificate packages and pip across both environments and all supported platforms.
- Updates test and documentation workflows to Pixi v0.83.0.
| File | Description |
|---|---|
pixi.toml |
Sets minimum patched Pixi and pip versions. |
pixi.lock |
Updates certificate packages, pip, and associated lock metadata. |
.github/workflows/docs.yml |
Uses Pixi v0.83.0 for documentation deployment. |
.github/workflows/ci.yaml |
Uses Pixi v0.83.0 for tests and documentation validation. |
Review effort: Balanced
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Update locked packages and GitHub Actions to versions fixed for the emSign CA incident.
Pixi 0.82.1 is the release fixed for the emSign CA incident.
Update the locked packages to versions fixed for the emSign CA incident.
Raise the floors in pixi.toml:
Output of
pixi update --manifest-path pixi.toml ca-certificates certifi pip:(output omitted here to keep the description short; it is in the commit message)