Issues

• Use the core script-output constants

  NL-BioImaging/biomero-scripts#100 · Filter by author TorecLuik opened on Nov 13, 2026

• [Shallow Zarr] Remove the input marker from results after import on every path

  NL-BioImaging/biomero-scripts#96 · Filter by author TorecLuik opened on Nov 13, 2026

• [Shallow Zarr] Migration script: move canonical sidecars via importer helpers (BIOMERO folders only)

  NL-BioImaging/biomero-scripts#94 · Filter by author TorecLuik opened on Nov 13, 2026

• Use the biomero-schema models when reading the import-storage record and canonical marker

  NL-BioImaging/biomero-scripts#93 · Filter by author TorecLuik opened on Nov 13, 2026

• Import the Zarr contracts from biomero-schema and own the UI colours

  NL-BioImaging/biomero-scripts#87 · Filter by author TorecLuik opened on Nov 12, 2026

• Detached processing: own launcher registration and resume in the scripts

  NL-BioImaging/biomero-scripts#86 · Filter by author TorecLuik opened on Nov 12, 2026

• [Shallow Zarr] Install the helper image from the installed shallower package at Slurm Init

  NL-BioImaging/biomero-scripts#82 · Filter by author TorecLuik opened on Nov 12, 2026

• Add a Slurm data cleanup script

  effort: highimpact: lowpriority: P5roadmap
  NL-BioImaging/biomero-scripts#80 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• Zarr plate export with ngio (metadata conditions per well etc.)

  priority: P5roadmap
  NL-BioImaging/biomero-scripts#79 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• [BUG][1.8] Table-only workflow outputs are skipped when an image destination is selected

  effort: mediumimpact: lowpriority: P4roadmap
  NL-BioImaging/biomero-scripts#78 · Filter by author pmkrawczyk opened on Nov 10, 2026

• Add clickable URL key/value metadata linking source and result images

  effort: highimpact: mediumpriority: P4roadmap
  NL-BioImaging/biomero-scripts#77 · Filter by author pmkrawczyk opened on Nov 10, 2026
  

• Improve image-export throughput with persistent workers, bounded parallelism, and pipelined archive batches

  NL-BioImaging/biomero-scripts#38 · Filter by author RAHoebe opened on Oct 7, 2026
  1

• Add optional pixel-reader audit for reused backing Zarr

  NL-BioImaging/biomero-scripts#21 · Filter by author TorecLuik opened on Sep 17, 2026

• Support ROI output

  enhancement
  NL-BioImaging/biomero-scripts#1 · Filter by author TorecLuik opened on Mar 18, 2024
  2