Issues

• how to set samples_per_target

  Mingchenchen/PPIFlow#38 · Filter by author wenyl1919 opened on Sep 11, 2026

• Clarification on the SO(3) Rotation Prior and Interpolation Schedule in PPIFlow

  Mingchenchen/PPIFlow#37 · Filter by author GLX1999 opened on Aug 13, 2026

• something aboyt run

  Mingchenchen/PPIFlow#36 · Filter by author amarantostaver-cloud opened on Jun 23, 2026
  6

• rank_score fix

  documentation
  Mingchenchen/PPIFlow#35 · Filter by author MacroHongZ opened on Jun 17, 2026

• errors when running the last af3score step

  Mingchenchen/PPIFlow#33 · Filter by author alexie2001xcc-dev opened on Jun 5, 2026
  1

• something about notes

  Mingchenchen/PPIFlow#32 · Filter by author amarantostaver-cloud opened on Jun 4, 2026
  2

• New Version Updated

  documentationenhancement
  Mingchenchen/PPIFlow#29 · Filter by author Mingchenchen opened on Apr 16, 2026

• Hydrophobic biasing

  Mingchenchen/PPIFlow#27 · Filter by author gezmi opened on Mar 29, 2026

• Binder design with motif scaffolding

  Mingchenchen/PPIFlow#26 · Filter by author gezmi opened on Mar 10, 2026
  1

• Clarify AF3 refold settings in paper/notebook: MSA usage and template usage (VHH/mAb vs de novo binders)

  Mingchenchen/PPIFlow#24 · Filter by author cytokineking opened on Feb 9, 2026
  5

• Missing external deps + incomplete env make repo hard to reproduce

  documentationenhancementquestion
  Mingchenchen/PPIFlow#11 · Filter by author cytokineking opened on Jan 23, 2026
  9

• setup for PyTorch 2.9.1 and Blackwell GPUs

  documentation
  Mingchenchen/PPIFlow#4 · Filter by author 21tesla opened on Jan 21, 2026
  11