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Migrate evalml to Linard (new Balfrin) #263

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Merged
dnerini merged 2 commits into from
Oct 2, 2026
Merged

Migrate evalml to Linard (new Balfrin) #263

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517a40b
Mount venv squashfs via srun --uenv instead of squashfs-mount (#260)
dnerini Sep 10, 2026
4898787
Merge branch 'main' into fix/linard-fixes
dnerini Oct 2, 2026
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26 changes: 14 additions & 12 deletions workflow/rules/inference.smk
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Original file line number Diff line number Diff line change
Expand Up @@ -298,7 +298,7 @@ rule inference_execute:
cd {params.workdir}

_run_inference() {{
local VENV=$1
local VENV=/user-environment
source "$VENV/bin/activate"

if [ "{params.disable_local_definitions}" = "False" ]; then
Expand All @@ -312,20 +312,22 @@ rule inference_execute:
CMD_ARGS+=(runner.parallel.cluster=slurm)
fi

srun \
--unbuffered \
{params.account_flag} \
--partition={resources.slurm_partition} \
--cpus-per-task={resources.cpus_per_task} \
--mem-per-cpu={resources.mem_mb_per_cpu} \
--time={resources.runtime} \
--gres={resources.gres} \
--ntasks={resources.ntasks} \
anemoi-inference run config.yaml "${{CMD_ARGS[@]}}"
anemoi-inference run config.yaml "${{CMD_ARGS[@]}}"
}}
export -f _run_inference

squashfs-mount {params.env_path}:/user-environment -- bash -c '_run_inference /user-environment'
srun \
--job-name=anemoi-inference \
--uenv={params.env_path}:/user-environment \
--unbuffered \
{params.account_flag} \
--partition={resources.slurm_partition} \
--cpus-per-task={resources.cpus_per_task} \
--mem-per-cpu={resources.mem_mb_per_cpu} \
--time={resources.runtime} \
--gres={resources.gres} \
--ntasks={resources.ntasks} \
bash -c '_run_inference'
) >{log} 2>&1
touch {output.okfile}
"""
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