Add station-group stratification #259
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@@ -14,7 +14,7 @@ _dev | |
| .vscode | ||
| .idea | ||
| .snakemake | ||
| output* | ||
| _sandbox/ | ||
| experiment_report.html | ||
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| # yaml-language-server: $schema=../workflow/tools/config.schema.json | ||
| description: | | ||
| Evaluate skill of Varda-rapid against ground observations. | ||
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| config_label: varda-rapid-0.2 | ||
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| dates: | ||
| # start: 2025-01-01T06:00 | ||
| # end: 2025-12-31T06:00 | ||
| # frequency: 294h | ||
| - 2025-03-01T00:00 | ||
| - 2025-04-02T06:00 | ||
| - 2025-07-02T12:00 | ||
| - 2025-11-02T18:00 | ||
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| runs: | ||
| - temporal_downscaler: | ||
| checkpoint: https://service.meteoswiss.ch/mlstore#/models/sruc-m-2-interpolator/versions/3 | ||
| label: Varda-rapid-0.2 | ||
| steps: 0/12/1 | ||
| config: resources/inference/configs/sgm-temporal-downscaler-global_trimedge_multi_with_nudging.yaml | ||
| extra_requirements: | ||
| - anemoi-datasets==0.5.35 | ||
| - git+https://github.com/MeteoSwiss/anemoi-plugins-meteoswiss@0e69b5916166a7feb104f892cdf2a091bd45bd56 | ||
| - git+https://github.com/ecmwf/anemoi-inference@88c1ec13632c570f246cc2580ce324e45f36a03b | ||
| forecaster: | ||
| checkpoint: https://service.meteoswiss.ch/mlstore#/models/sruc-m-1-forecaster/versions/4 | ||
| config: resources/inference/configs/sgm-multidataset-forecaster-global-ich1-oper.yaml | ||
| steps: 0/12/6 | ||
| extra_requirements: | ||
| - git+https://github.com/MeteoSwiss/anemoi-plugins-meteoswiss@0e69b5916166a7feb104f892cdf2a091bd45bd56 | ||
| - git+https://github.com/ecmwf/anemoi-inference@88c1ec13632c570f246cc2580ce324e45f36a03b | ||
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| - temporal_downscaler: | ||
| checkpoint: https://service.meteoswiss.ch/mlstore#/models/sruc-m-2-interpolator/versions/3 | ||
| label: Varda-single-1.0 | ||
| steps: 0/12/1 | ||
| config: resources/inference/configs/sgm-temporal-downscaler-global_trimedge_multi.yaml | ||
| extra_requirements: | ||
| - anemoi-datasets==0.5.35 | ||
| - git+https://github.com/MeteoSwiss/anemoi-plugins-meteoswiss@cc116a80c86346cb8de4449c1091bb2c6299a302 | ||
| - git+https://github.com/ecmwf/anemoi-inference@88c1ec13632c570f246cc2580ce324e45f36a03b | ||
| forecaster: | ||
| checkpoint: https://service.meteoswiss.ch/mlstore#/models/sruc-m-1-forecaster/versions/4 | ||
| config: resources/inference/configs/sgm-multidataset-forecaster-global-ich1-oper.yaml | ||
| steps: 0/12/6 | ||
| extra_requirements: | ||
| - git+https://github.com/MeteoSwiss/anemoi-plugins-meteoswiss@cc116a80c86346cb8de4449c1091bb2c6299a302 | ||
| - git+https://github.com/ecmwf/anemoi-inference@88c1ec13632c570f246cc2580ce324e45f36a03b | ||
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| - baseline: | ||
| label: INCA | ||
| root: /store_new/mch/msclim/INCA | ||
| steps: 0/6/1 | ||
| - baseline: | ||
| label: ICON-CH2-CTRL | ||
| root: /store_new/mch/msopr/osm/ICON-CH2-EPS | ||
| steps: 0/12/1 | ||
| - baseline: | ||
| label: ICON-CH1-CTRL | ||
| root: /store_new/mch/msopr/osm/ICON-CH1-EPS | ||
| steps: 0/12/1 | ||
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| truth: | ||
| label: SwissMetNet | ||
| root: jretrievedwh:bbox=45.7,48.0,5.8,10.8;use_limitation=40 | ||
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| experiment: | ||
| params: | ||
| - T_2M | ||
| - TD_2M | ||
| - U_10M | ||
| - V_10M | ||
| - TOT_PREC | ||
| - PMSL | ||
| - PS | ||
| stratification: | ||
| regions: | ||
| - icon | ||
| - switzerland | ||
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Member
There was a problem hiding this comment. this is not supported in evalml/workflow/rules/common.smk Line 82 in 24b5b02
Contributor
Author
There was a problem hiding this comment. I had to perform a couple of tests, and therefore added the shapefile and support for this region. Note that this did not require any code change, but solely uploading the shapefile to the correct path
Member
There was a problem hiding this comment. oh I see, thanks, very well. Could you just make sure that the shape files have the same permissions as the other ones in that same folder? |
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| - mittelland | ||
| - berge | ||
| - alpennordseite | ||
| - alpensuedseite | ||
| - jura | ||
| root: /store_new/mch/msopr/ml/regions/Prognoseregionen_LV95_20220517 | ||
| thresholds: | ||
| TOT_PREC: | ||
| gt: [0.0, 1, 5] | ||
| U_10M: | ||
| gt: [2.5, 5.0, 10.0] | ||
| V_10M: | ||
| gt: [2.5, 5.0, 10.0] | ||
| T_2M: | ||
| lt: [273.15] | ||
| gt: [288.15, 298.15] | ||
| dashboard: | ||
| stratification: | ||
| - season | ||
| # - region | ||
| station_holdout: | ||
| - CHM | ||
| - FRE | ||
| - RUE | ||
| - BAS | ||
| - PLF | ||
| - CGI | ||
| - HOE | ||
| - PUY | ||
| - RAG | ||
| - EIN | ||
| - ALT | ||
| - GOS | ||
| - COV | ||
| - ULR | ||
| - BIN | ||
| - GUE | ||
| - ROE | ||
| - BIA | ||
| - CEV | ||
| - OTL | ||
| scoremaps: | ||
| enabled: false | ||
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| showcase: | ||
| params: | ||
| - T_2M | ||
| - TD_2M | ||
| - U_10M | ||
| - V_10M | ||
| meteograms: | ||
| enabled: false | ||
| stations: [JUN, KLO, LUG, GVE] #, COV, GOR, WFJ, SAE, SAM, DAV, ZER, ANT, VSBAS, BRT, LTB, GOS, CEV, BIA] | ||
| animations: | ||
| enabled: true | ||
| frames_per_second: 0.5 | ||
| domains: | ||
| # - globe | ||
| # - europe | ||
| - alps | ||
| - icon-ch | ||
| - switzerland | ||
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| locations: | ||
| output_root: output/ | ||
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| profile: | ||
| executor: slurm | ||
| global_resources: | ||
| gpus: 16 | ||
| default_resources: | ||
| slurm_partition: "normal" | ||
| cpus_per_task: 1 | ||
| mem_mb_per_cpu: 1800 | ||
| runtime: "1h" | ||
| gpus: 0 | ||
| slurm_account: s83 | ||
| jobs: 50 | ||
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Member
There was a problem hiding this comment. this config can't be used by anyone else since in multiple instances it points to your personal folders, correct? Can we fix this? Otherwise remove the yaml
Contributor
Author
There was a problem hiding this comment. I removed the yaml. I will make a separate PR with varda-rapid related configs |
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| runner: temporal_downscaler | ||
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| input: | ||
| cutout: | ||
| - lam_0: | ||
| grib: | ||
| path: forecaster/20* | ||
| pre_processors: | ||
| - forward_transform_filter: | ||
| # does not have an effect if the temporal downscaler does not use tp as prognostic variable | ||
| rescale: | ||
| scale: 0.001 # convert from kg m-2 to m | ||
| offset: 0 | ||
| param: tp | ||
| # nudge the initial condition toward station observations. | ||
| - forward_transform_filter: | ||
| retrieve_observation: | ||
| obs_path: observation/nudging_station_obs_raw.parquet | ||
| jretrieve_src_path: /scratch/mch/llanzila/sruc/evalml/src | ||
| retrieval_bbox: [40.5, 53.0, 0.0, 17.5] | ||
| # station_group: "1,2" | ||
| variables: [T_2M, TD_2M, U_10M, V_10M, TOT_PREC, PMSL, PS] | ||
| use_limitation: 40 | ||
| run_mode: "devt" | ||
| station_filter_mode: domain | ||
| trim_bbox: [45.7, 48.0, 5.8, 10.8] | ||
| - forward_transform_filter: | ||
| clean_observation: | ||
| obs_path_in: observation/nudging_station_obs_raw.parquet | ||
| obs_path_out: observation/nudging_station_obs.parquet | ||
| - forward_transform_filter: | ||
| nudge_toward_observation: | ||
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dnerini marked this conversation as resolved.
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| obs_path: observation/nudging_station_obs.parquet | ||
| nudge_variables: [T_2M, TD_2M, U_10M, V_10M, PMSL, PS] | ||
| icon_grid_file: /scratch/mch/llanzila/sruc/aux_files/icon_grid_0001_R19B08_mch.nc | ||
| icon_orog_file: /scratch/mch/icontest/testing-input-data/c2sm/icon-1/external_parameter_icon_grid_0001_R19B08_mch.nc | ||
| d_eff_file: /scratch/mch/llanzila/sruc/aux_files/d_eff_cache_domain_maxdist50km_nbar50x3_bw1500m_elev50_elevdiff100_nsta1939.nc | ||
| weight_power: 2.0 | ||
| max_dist: 50000.0 | ||
| use_reliability_check: true | ||
| number_of_std: 5.0 | ||
| reliability_min_dist_frac: 0.03 | ||
| write_diagnostics: true | ||
| diagnostics_dir: nudging_diagnostics | ||
| run_mode: "devt" | ||
| namer: &namer | ||
| rules: | ||
| - - shortName: T | ||
| - t_{level} | ||
| - - shortName: U | ||
| - u_{level} | ||
| - - shortName: V | ||
| - v_{level} | ||
| - - shortName: W | ||
| - w_{level} | ||
| - - shortName: QV | ||
| - q_{level} | ||
| - - shortName: FI | ||
| - z_{level} | ||
| - - shortName: PMSL | ||
| - msl | ||
| - - shortName: FIS | ||
| - z | ||
| - - shortName: PS | ||
| - sp | ||
| - - shortName: T_2M | ||
| - 2t | ||
| - - shortName: TD_2M | ||
| - 2d | ||
| - - shortName: T_G | ||
| - skt | ||
| - - shortName: U_10M | ||
| - 10u | ||
| - - shortName: V_10M | ||
| - 10v | ||
| - - shortName: FR_LAND | ||
| - lsm | ||
| - - shortName: TOT_PREC | ||
| - tp | ||
| - global: | ||
| grib: | ||
| path: forecaster/ifs* | ||
| namer: *namer | ||
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| constant_forcings: | ||
| test: | ||
| use_original_paths: true | ||
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| patch_metadata: resources/sgm-temporal-downscaler-ich1-oper-patch.yaml | ||
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| post_processors: | ||
| - accumulate_from_start_of_forecast: # accumulate tp from start of forecast | ||
| accumulations: | ||
| - tp | ||
| - forward_transform_filter: | ||
| rescale: | ||
| scale: 1000 # convert units from m to kg m-2 | ||
| offset: 0 | ||
| param: tp | ||
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| output: | ||
| tee: | ||
| - grib: | ||
| path: grib/{dateTime}_{step:03}.grib | ||
| encoding: | ||
| typeOfGeneratingProcess: 2 | ||
| templates: | ||
| samples: resources/templates_index_icon.yaml | ||
| post_processors: | ||
| - extract_mask: # removes global points | ||
| mask: "lam_0/cutout_mask" | ||
| as_slice: true | ||
| # here, the trimedge mask can be specified when available | ||
| # at overlap steps (multiples of the forecaster stride) replace the | ||
| # re-predicted prognostics with the forecaster's boundary values | ||
| - forward_transform_filter: | ||
| copy-prognostic-from-forecaster: | ||
| forecaster_path: forecaster/20* | ||
| common_leadtime: 6h | ||
| params_to_keep: [tp] # NOTE, if more diagnostics are added, update accordingly. | ||
| namer: *namer | ||
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| - grib: | ||
| path: grib/ifs-{dateTime}_{step:03}.grib | ||
| encoding: | ||
| typeOfGeneratingProcess: 2 | ||
| templates: | ||
| samples: resources/templates_index_ifs.yaml | ||
| post_processors: | ||
| - extract_mask: # removes lam points | ||
| mask: "lam_0/cutout_mask" | ||
| as_slice: true | ||
| inverse: true | ||
| - assign_mask: # fill local/global overlapping points with nan | ||
| mask: "global/cutout_mask" | ||
| - forward_transform_filter: | ||
| copy-prognostic-from-forecaster: | ||
| forecaster_path: forecaster/ifs* | ||
| common_leadtime: 6h | ||
| params_to_keep: [tp] # NOTE, if more diagnostics are added, update accordingly. | ||
| namer: *namer | ||
| modifiers: | ||
| - patches: | ||
| - variable: | ||
| U_10M: {"param": 165, "shortName": "10u"} | ||
| 10u: {"param": 165, "shortName": "10u"} | ||
| V_10M: {"param": 166, "shortName": "10v"} | ||
| 10v: {"param": 166, "shortName": "10v"} | ||
| TD_2M: {"param": 168, "shortName": "2d"} | ||
| 2d: {"param": 168, "shortName": "2d"} | ||
| T_2M: {"param": 167, "shortName": "2t"} | ||
| 2t: {"param": 167, "shortName": "2t"} | ||
| FR_LAND: {"param": 172, "shortName": "lsm"} | ||
| lsm: {"param": 172, "shortName": "lsm"} | ||
| PMSL: {"param": 151, "shortName": "msl"} | ||
| msl: {"param": 151, "shortName": "msl"} | ||
| PS: {"param": 134, "shortName": "sp"} | ||
| sp: {"param": 134, "shortName": "sp"} | ||
| SSO_SIGMA: {"param": 163, "shortName": "slor"} | ||
| slor: {"param": 163, "shortName": "slor"} | ||
| SSO_STDH: {"param": 160, "shortName": "sdor"} | ||
| sdor: {"param": 160, "shortName": "sdor"} | ||
| TOT_PREC: {"param": 228, "shortName": "tp"} | ||
| tp: {"param": 228, "shortName": "tp"} | ||
| z: {"param": 129, "shortName": "z"} | ||
| "^q_(\\d+)$": {"param": 133, "shortName": "q"} | ||
| "^t_(\\d+)$": {"param": 130, "shortName": "t"} | ||
| "^u_(\\d+)$": {"param": 131, "shortName": "u"} | ||
| "^v_(\\d+)$": {"param": 132, "shortName": "v"} | ||
| "^w_(\\d+)$": {"param": 135, "shortName": "w"} | ||
| "^z_(\\d+)$": {"param": 129, "shortName": "z"} | ||
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| # silenced due to bug in anemoi-inference for multi-step temporal downscalers, can be removed when fixed | ||
| verbosity: 0 | ||
| allow_nans: true | ||
| output_frequency: "1h" | ||
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is adding an experiment yaml really necessary for this new feature PR?
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I removed the yaml. I will make a separate PR with varda-rapid related configs