Antibiotic Resistant E.coli

This repository contains the code accompanying the paper titled "A dose response model for Antibiotic Resistant E.coli". The root directory has the following project associated contents:

• analysis.Rmd - snippets to run all the analyses associated with this publication
• mak_figs.Rmd - generate all the figures associated with this publication from the analyses
• codes (directory)
  • helpers.R - contains most of the functions used in the analysis
  • PAWN.R - contains the sensitivity analysis algorithm PAWN [1]
• results (directory)
  • Contains the outputs generated by analysis.Rmd
• images (directory)
  • Contains the outputs generated by make_figs.Rmd

The root directory also has the license, this readme and the .gitgnore.

References

[1]: Pianosi, F., & Wagener, T. (2015). A simple and efficient method for global sensitivity analysis based on cumulative distribution functions. Environmental Modelling & Software, 67, 1–11. https://doi.org/10.1016/j.envsoft.2015.01.004