Skip to content
View Hongda-Zhao's full-sized avatar
1 follower · 1 following

Achievements

Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: YOLOAchievement: Quickdraw

Block or report Hongda-Zhao

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Hongda-Zhao/README.md

Hi, I'm Hongda 👋

I'm a bioinformatics PhD candidate at Kyoto University and a JSPS Research Fellow (DC1).

I study viruses hidden in eukaryotic genomes and build computational workflows for large-scale genome and protein analysis. Recently, I've also been exploring protein language models and AI for Science.

Outside research, I enjoy observing and documenting biodiversity on iNaturalist.

Featured Project

DJR-MCP Finder

A reproducible tool that uses protein language model embeddings to screen for double-jelly-roll major capsid protein candidates.

Find Me Elsewhere

Google Scholar · ORCID · iNaturalist ·

Popular repositories Loading

  1. DJR-MCP-Finder DJR-MCP-Finder Public

    A reproducible protein-language-model pipeline for detecting double-jelly-roll major capsid proteins from FASTA files.

    Python 1

  2. Hongda-Zhao Hongda-Zhao Public

    Config files for my GitHub profile.

  3. Hongda-Zhao.github.io Hongda-Zhao.github.io Public

    Personal website and blog of Hongda Zhao

    SCSS

  4. bio-gene-to-reference-tree bio-gene-to-reference-tree Public

    Auditable agent skill for resolving protein queries, selecting references, and planning reproducible phylogenetic trees.

    Python