This is a repository of code developed in the Zhuang lab for analysis of STORM movies.
Some algorithms were developed in other groups and ported to Python. In this case the license applies only to our implementation of the code. If you plan to use the algorithm in a commercial product you should discuss this with the original developers (IANAL).
The code has most recently been tested with Python3.10.
This is a fork of the original storm-analysis project. The upstream code is unmodified except where noted below; the changes here adapt the multiplane analysis pipeline to run on OME-format camera data.
New and adapted code lives in storm_analysis/kg_adaptations/, which documents what each module does, how it relates to the upstream version (if any), and the notebook workflow that uses it.
The documentation for the latest release is here.
The documentation for git head is here.
Jupyter notebooks that document how to use this project are available in the jupyter_notebooks directory.
Additional notebooks are available here.