Issues

• CCI analysis for imaging-based ST data

  BiomedicalMachineLearning/stLearn#344 · Filter by author ynpan910 opened on Mar 29, 2026

• pseudotimespace_global() always yields "Connectivity is undefined for the null graph" exception

  BiomedicalMachineLearning/stLearn#340 · Filter by author marcouderzo opened on Nov 12, 2025

• Workflow to Explore Trajectories from Root Cluster

  BiomedicalMachineLearning/stLearn#332 · Filter by author marcouderzo opened on Jul 15, 2025
  8

• No arrows displayed when running the Spatial trajectory inference analysis

  BiomedicalMachineLearning/stLearn#317 · Filter by author SA-coder-netizen opened on Jan 7, 2025
  2

• How to distinguish between sender spots and receiver spots? stlearn distance =200

  BiomedicalMachineLearning/stLearn#315 · Filter by author smk5g5 opened on Nov 18, 2024

• Running time of PTST analysis for Xenium data

  BiomedicalMachineLearning/stLearn#306 · Filter by author ghost opened on Jul 18, 2024
  3