Backus Lab at UCLA
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Repositories
- LFQ-kinase_MBR_CN Public
- RNAseq_expression_merge Public
Merging of RNAseq transcript abundance and proteomics protein abundances, calculations of discordance and visualizations.
- Ensemble-Prediction-Pipeline-To-Identify-Neoantigens Public Forked from Jose-Paredes-Larios/Ensemble-Prediction-Pipeline-To-Identify-Neoantigens
- FPICS-Iodination-Quant Public Forked from NitheshPerumal/FPICS-Iodination-Quant
Quantify site specific iodination using PSM level data
- POCA_Becker Public
R code used for visualization of mass spectrometry samples where protein abundance is quantified with label free–match between runs and code for multiple linear regression & Spearman corrlation analyses.
- ms_cpdaa_analysis Public Forked from lmboat/ms_cpdaa_analysis
Mass spectrometry-based chemoproteomics pipeline for analyzing electrophile selectivity and identifying chemoproteomics detected amino acids (CpDAAs)
- Custom-Variant-Database Public Forked from ndaw365/FASTA-Variant-Processing-
Tool to generate protein databases for custom variants
- DepMAP-Database-Generation Public Forked from ndaw365/Protein-and-Peptide-Database-Generation
Tool to generate Protein and Peptide Databases from Variant Expression data in DepMAP
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