diff --git a/CHANGELOG.md b/CHANGELOG.md index e420bbd3..637ccaa1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,7 @@ release completed. ## [Unreleased] ### Added +- Five accepted tier-3 records (curator sign-off 2026-10-30, J. Stajich): *Saccharomycopsis schoenii* GDD12 MATss (MATa-MATalpha left cluster and MATa right cluster, `db/Ascomycota/Ascoideales/`), *Barnettozyma californica* PB4207 MATbz and *Petasospora fabianii* MATpf (JOY008 MATa, TBRC 4498 MATalpha, `db/Ascomycota/Phaffomycetales/`). The gene models are our own (RNA-seq for *S. schoenii*, sequence-based for the others). With them, 20 of the 21 genomes that lose every MATsc/MTL call under the v0.8 cross-family rules are called again by their own family (trial run, `--preset v0.8`); *Ogataea degrootiae* GCA_019232045.1 stays uncalled. - Raw-reads wave 2 (`datasets/reads/sra_survey/pilot/wave2/`): 55 more tier A, A1 and B species typed (1,468 runs; 13 confirmed, 16 provisional, 7 provisional-homothallic, 49 withheld), yeast idiomorph names (a / alpha, P / M, A / B) carried through, *Botrytis cinerea* typed on all 333 eligible samples. Species reports gain an allele-count table for all studies pooled or study by study, per run or per clone, and clone groups for every species with 10 or more sketched runs (average linkage at 0.998; counts per clone only where the clone number is stable). Output only; the genome tables and the database are unchanged. - Idiomorph labels beside the raw names (curator rulings of 2026-10-28): `scripts/idiomorph_label_registry.json` (lineage and reference-organism codes, cell tokens, gene maps), `scripts/idiomorph_labels.py`, `scripts/label_loci_table.py`; the site data carry `label_alleles` in `taxa.json`, `call_label` / `alleles_label` in the genome tables and `data/idiomorph_labels.json`, and the explorer shows `Lineage__System_Cell` labels (for example `Taphr__SchPom_M`, `Sacch__CanAlb_alpha`, `Peziz__AspFum_MAT1-1`) with the raw name and the reference organism in the tooltip, and a switch back to the raw names. Output only: the database, the reports and the raw columns are unchanged. All 27,885 v0.7.0 loci are labelled. Duplicate family calls (`scripts/dedupe_family_calls.py`) are not removed from the counts. - Raw-reads pages (`web/intro/reads/`): an overview of the wave 1 read typing (112 species, 1,629 runs, 599 of 605 single-allele calls agree with an assembly call) with the confidence of each species panel (confirmed / provisional / withheld), and one report per species (calls, agreement with assemblies, calls by study, every run, TSV download). Data written at site-build time by `scripts/build_reads_site.py` from `datasets/reads/sra_survey/pilot/wave1/`; the landing page links to it. The counts are of public runs, not population frequencies. The three curated collections (Fola 148 strains, *A. fumigatus* 331 read sets, *Coccidioides* 558 strains) have their own reports on the same pages, built from their committed tables; the old raw-reads table and Coccidioides chart on the landing page are replaced by a pointer. diff --git a/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gbk b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gbk new file mode 100644 index 00000000..ce1313ea --- /dev/null +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gbk @@ -0,0 +1,109 @@ +LOCUS CM143129.1 3130 bp DNA UNK 01-JAN-1980 +DEFINITION 44080_gdd12_MATss_MATa-MATalpha core locus segment 0 (CM143129.1). +ACCESSION 44080_gdd12_MATss_MATa-MATalpha.segment0 +VERSION 44080_gdd12_MATss_MATa-MATalpha.segment0 +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + gene 1..603 + /gene="MATalpha2" + /role="core_MAT" + CDS 1..603 + /gene="MATalpha2" + /role="core_MAT" + /translation="MESLSNVYNSLLSELTVDSIVNNKMEVNAIKQKVVKILKEYSKIS + SQNRTSLLSVADFCDILIQLIGERYNLLNDIFYCQNRITRTLSNVPVVKNDEPAEEVSF + NIVTQSQIKRSDYKALRKCRHFNTETRRKLEQWYKLSDFSKEAIEKFSNEVNLDVVQIK + NWVSNKKRKEKKAISKGIIDVSKTFSPSNVYVMTGDL" + /transl_table=12 + gene complement(672..1247) + /gene="MATalpha1" + /role="core_MAT" + CDS complement(672..1247) + /gene="MATalpha1" + /role="core_MAT" + /translation="MGILQQNYKTKCHKFTNYSFRKVKSATPIRYPTTFQNTFYFDSLP + KIPKCYSKLEDLLTEFKKTPRMNEISDQCTEKKKNKAQKKPTKRKLNGFIAYRSYYSKN + IHDTALQIEVSKRLATVWKDDPSADIWKRFAFEYNKSDENMPFLEWLDVKTSQMDKVNK + QATNGCDFFLDFEVLNFICDIEGKYVVS" + /gene_class="alpha_box" + /transl_table=12 + gene 1613..2141 + /gene="MATa1" + /role="core_MAT" + CDS join(1613..1879,2097..2141) + /gene="MATa1" + /role="core_MAT" + /translation="MLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSN + NSRYSRKTTEYLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP" + /transl_table=12 + gene complement(2360..3130) + /gene="sla2" + /role="flanking_conserved" + CDS complement(2360..3130) + /gene="sla2" + /role="flanking_conserved" + /translation="EIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKNLQDLS + PIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNRWTEGL + ISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKATQFSKT + QDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQQAEII + KLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY" + /gene_class="sla2_homolog" + /transl_table=12 +ORIGIN + 1 atggaatcac tttccaacgt atacaatagc cttttgtcgg agctcacggt tgattctatt + 61 gtaaacaaca agatggaagt caatgcaatc aaacaaaagg ttgttaaaat attgaaagaa + 121 tattcgaaaa tatcctctca gaacaggaca tctttattgt cggttgctga tttctgtgat + 181 atcttgatcc aactaattgg cgaaagatat aatcttttga atgacatttt ttactgtcaa + 241 aatagaatta ctaggacgtt atcaaacgtt cctgttgtta aaaacgacga gcctgcagag + 301 gaagtctcat tcaacatagt gacacagtca caaataaaac gtagtgacta caaggcctta + 361 cggaaatgcc gtcatttcaa tactgaaacc agacggaagc ttgaacaatg gtacaagcta + 421 agtgactttt caaaggaagc aattgaaaag tttctgaatg aagtcaattt ggacgttgtt + 481 cagatcaaga actgggtttc gaataagaaa agaaaagaaa aaaaagctat aagcaagggt + 541 attatcgatg ttctgaagac ttttagtcca agcaatgtat acgtcatgac tggggattta + 601 taaatatttt ctttctttcg tttatttatt tatttattta taataaatat atataagtat + 661 ttaattcatt tttatgaaac cacatatttt ccttctatat cacagatgaa attgagaact + 721 tcaaaatcta ggaaaaagtc acaaccattt gtagcttgtt tatttacctt gtccatttga + 781 ctagttttga catcaagcca ttctagaaat ggcatgtttt cgtctgactt attatactca + 841 aacgcaaatc ttttccatat atccgctgac gggtcatctt tccacactgt tgccaacctt + 901 ttagatactt caatctggag agctgtatcg tggatatttt tagaataata tgacctgtaa + 961 gcaataaagc cattcaactt tcttttggtt ggtttcttct gtgccttgtt tttctttttt + 1021 tccgtacatt gatcgcttat ttcattcatt ctgggagttt tcttgaattc agttaataaa + 1081 tcttcaagct tcagataaca tttaggaatt ttaggaagag aatcgaaata aaatgtattt + 1141 tgaaatgtag taggatatct tattggtgtt gcacttttaa ccttacgaaa agaatagttg + 1201 gtgaatttat ggcattttgt tttatagttc tgctgtaaga tgcccatttt tttctttctg + 1261 gtttttattt tctttgcaaa acagtatata ataaatgcaa atgaatatat ttcaaggaat + 1321 ttcaaggaaa agtactcatt tatatgtatt ttgtatatac taaagcaact aaaacaataa + 1381 taataatgca cgcatgcatg tcaaaaataa gtataaactt atttttttgc ttttctttta + 1441 agggtgctta atgatgatta actttccttc tggcatccac aagaaaaaaa aaaaagcaaa + 1501 aaacacgaac tcaatttgca tcggaacttt actattttag ttatcggatg cagcaataaa + 1561 gagtggattc aaagtgtgtg ataaggattc agtttataat aaaacagaaa ggatgttgat + 1621 cgtcgacatt ttcttatcac aatccactct caaatccagc aaatatacag ataagttaag + 1681 aaagtatctt gaagatagag gtgtagatat agttgtttta atgcatgacc agctgcaaac + 1741 gtctaataat tcgagatact ctaggaaaac tactgaatat ctagaacttc ttttcgatac + 1801 aaatcctaga cctaattctc gtgaaagatt attcatagcg aagcaatgtg gattaagtgc + 1861 caaacaagtc agaatatggg tgagtatttt attattatta ttattattat tattattatt + 1921 cttcttcttc ttcttcttgt tgttgttgtt ttatacaaat atatatatat atatatatat + 1981 atatatatat atatatatat tatttgtgtg ggacgggggt ggaggaggca gcagcaacct + 2041 gaaatttata tttttatttg gcaagcaata tctagaacta acaagtattt ttatagttta + 2101 ccaacagacg tgctagggtc aaaaagacac aaaagccata gaataataat ttattattac + 2161 gtaaatatat atatataaag agaaagagag agaataaata ataaacttta atctttgttt + 2221 ttcttgtttt tcttgttttt tttttttttt ttttttgttt tttttaatcg tatgttgtaa + 2281 tatttctttc tttaaataaa ttttttattg agtgatatac tggaggagta agagtgtaat + 2341 tttaatttaa ttaatatatc taatattctt catcattatc gctatcatca tcatcatctt + 2401 gataactata ttttctaata tcacctaatc tctttctagc agcacctaag gcattctcca + 2461 acttgatgat ttctgcttgt tgtttcattt cttcttttct attatcaatg atactcaact + 2521 tggagaaatc aatatcatca ttaactaatt gtgtagattt attaatcaat tcttgcactt + 2581 ggcttactaa gctcttgcaa gcaatagaca ccttcttact tgcatcttcc aaattgtctt + 2641 gagtcttgga gaactgcgta gctttaactc ttgcagctgc cactagctga atagtagaag + 2701 atgcaacttc attagatgcc acaatcaatt cctcgtgtgt attcttacca ctcaaattac + 2761 catccgcagt ttgaattaat aagttggtag cagatgcaac agctttagca gcagagatta + 2821 atccttctgt ccatctatta ttctttttgt agaattgggc tcttgtactt gaacctttac + 2881 catttgcaac aatctcatgt tgagtatcga tggctgcaga gattaacatc gaaatagctt + 2941 tggtgatagc aatggatgct gccaaaatag ccttattgac ttctaagtca ataggtgaca + 3001 agtcctgtaa gtttttgctg gttagcaacg acgtcaagtg taatgtagct tgcttgataa + 3061 cctccgcagc agcgttcatt tcgttgtcca ccaagctttc taactcctct tctgtttgtt + 3121 tttcgatctc +// diff --git a/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gff3 b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gff3 new file mode 100644 index 00000000..ffe22589 --- /dev/null +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/locus.gff3 @@ -0,0 +1,6 @@ +##gff-version 3 +##sequence-region CM143129.1 470349 473478 +CM143129.1 MATPredict gene 470349 470951 . + . ID=44080_gdd12_MATss_MATa-MATalpha.gene0;Name=MATalpha2;role=core_MAT +CM143129.1 MATPredict gene 471020 471595 . - . ID=44080_gdd12_MATss_MATa-MATalpha.gene1;Name=MATalpha1;role=core_MAT +CM143129.1 MATPredict gene 471961 472489 . + . ID=44080_gdd12_MATss_MATa-MATalpha.gene2;Name=MATa1;role=core_MAT +CM143129.1 MATPredict gene 472708 473478 . - . ID=44080_gdd12_MATss_MATa-MATalpha.gene3;Name=sla2;role=flanking_conserved diff --git a/db/candidates/Ascomycota/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml similarity index 99% rename from db/candidates/Ascomycota/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml rename to db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml index fc7b9f0f..cf2472f5 100644 --- a/db/candidates/Ascomycota/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/metadata.yaml @@ -144,7 +144,7 @@ evidence: paper''s' citations: *id001 validation: - status: needs_review + status: accepted rejection_reason: null accession_resolved: false accession_resolved_date: null diff --git a/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/proteins.faa b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/proteins.faa new file mode 100644 index 00000000..cd9dcea3 --- /dev/null +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa-MATalpha/proteins.faa @@ -0,0 +1,8 @@ +>44080_gdd12_MATss_MATa-MATalpha|gene_index=0|name=MATalpha2|role=core_MAT +MESLSNVYNSLLSELTVDSIVNNKMEVNAIKQKVVKILKEYSKISSQNRTSLLSVADFCDILIQLIGERYNLLNDIFYCQNRITRTLSNVPVVKNDEPAEEVSFNIVTQSQIKRSDYKALRKCRHFNTETRRKLEQWYKLSDFSKEAIEKFSNEVNLDVVQIKNWVSNKKRKEKKAISKGIIDVSKTFSPSNVYVMTGDL +>44080_gdd12_MATss_MATa-MATalpha|gene_index=1|name=MATalpha1|role=core_MAT +MGILQQNYKTKCHKFTNYSFRKVKSATPIRYPTTFQNTFYFDSLPKIPKCYSKLEDLLTEFKKTPRMNEISDQCTEKKKNKAQKKPTKRKLNGFIAYRSYYSKNIHDTALQIEVSKRLATVWKDDPSADIWKRFAFEYNKSDENMPFLEWLDVKTSQMDKVNKQATNGCDFFLDFEVLNFICDIEGKYVVS +>44080_gdd12_MATss_MATa-MATalpha|gene_index=2|name=MATa1|role=core_MAT +MLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSNNSRYSRKTTEYLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP +>44080_gdd12_MATss_MATa-MATalpha|gene_index=3|name=sla2|role=flanking_conserved +EIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKNLQDLSPIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNRWTEGLISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKATQFSKTQDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQQAEIIKLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY diff --git a/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gbk b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gbk new file mode 100644 index 00000000..5dbc8a64 --- /dev/null +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gbk @@ -0,0 +1,123 @@ +LOCUS CM143129.1 4190 bp DNA UNK 01-JAN-1980 +DEFINITION 44080_gdd12_MATss_MATa core locus segment 0 (CM143129.1). +ACCESSION 44080_gdd12_MATss_MATa.segment0 +VERSION 44080_gdd12_MATss_MATa.segment0 +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + gene 1..1848 + /gene="sla2" + /role="flanking_conserved" + CDS 1..1848 + /gene="sla2" + /role="flanking_conserved" + /translation="NLLQKFKKLQQKAASAQEAIDKRDRIEKDLKAKNVELADLIKERD + RARLEIDKLRGSKDSLIEKLEAEVNTLKDKLDVTERNQSSNLNSIFNAHRKEMEELETK + LKERESQISEMSPESNAELQETLREKDEEIEILQQTMDDALKQLAESKRESEEAIDEQI + DTVLQEHIMKLVAIIDSILQSGVKRIEDSLFELDSSMQGGNQNSSPSYLLTIIEKAGET + SQEFATAFNNFIADGPSGDYAEIISTISEFTSCITDVELNVKGIIKFCKTENLENSLLS + SARLVGETCIEFLEDLLSKNLESLSEEQKSDKVIEGVVEIHERLEELTTLIETIASTSG + GGGGGGGGSSSSNSNKKFIEIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKN + LQDLSPIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNR + WTEGLISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKAT + QFSKTQDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQ + QAEIIKLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY" + /gene_class="sla2_homolog" + /transl_table=12 + gene complement(2066..2964) + /gene="MATa1" + /role="core_MAT" + CDS complement(join(2066..2110,2316..2654,2713..2964)) + /gene="MATa1" + /role="core_MAT" + /translation="MSDNEKIAITVGEMVAKLRDTEQCIIRTTGRTSADISISDFTKDT + NSYVQYYHLTESEHIPEELKLSYKPLIERYQTYLNTIIKLSDAAIKSGFKVCDKDSVYN + KTERMLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSNNSRYSRKTTE + YLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP" + /transl_table=12 + gene 3399..4190 + /gene="MATa2" + /role="core_MAT" + CDS 3399..4190 + /gene="MATa2" + /role="core_MAT" + /translation="MSKKILSFQLPKVNRNKDNNIAVTGFPYMDRTTKKHTSYETYNVI + AVNCDVIVSTVISKKSNKNNNRKEEPTRPRNKFMIARSFINCLLRYKETAINSQTVSKI + VSDIWRNSGQNFVSYFDYLAIFDNNLHQQIFDNDFLRFKTKRTINKKHLNMKGTFVYEV + PEKSYLAEQIEPQTILMKSRKEYLDLCASSLLGKENTILESTLKINAHCDTKSVALPFD + ILKNSKKTQYGKPRKSKKLDLKQPMFSKFSILSSKVGKQKI" + /transl_table=12 +ORIGIN + 1 aatttattgc aaaaattcaa aaagttgcaa caaaaggctg catctgcaca ggaggctatt + 61 gataagagag acaggattga gaaagatttg aaggcgaaga atgttgaatt ggcagatttg + 121 attaaagaac gtgacagagc taggttggag attgacaagt taagagggtc taaggactct + 181 ttgattgaaa aactagaagc cgaagttaat actttgaagg ataagttgga tgtgacagaa + 241 agaaaccagt cgtctaattt gaactccatt ttcaacgcac accgaaaaga aatggaagaa + 301 cttgaaacca aattgaaaga aagagaatcg caaatctcag agatgtcacc agagtcaaat + 361 gctgagctac aggaaacatt gcgtgaaaag gatgaggaaa tcgaaatttt acaacagaca + 421 atggatgatg cgttaaaaca gttagccgag tctaaaaggg aaagcgaaga agctatcgat + 481 gaacaaattg atacagtgtt acaagaacat atcatgaagc tagttgctat tatagattcc + 541 attttgcaaa gcggtgtgaa acgaatcgaa gatagtttat tcgagcttga ttcttcgatg + 601 caaggcggta atcaaaactc atcaccatca tacttgctaa ccattattga aaaagcaggc + 661 gaaacaagtc aagaatttgc tacggctttc aataacttta tcgctgatgg accaagcggt + 721 gattatgctg agatcatttc tactatttca gaattcactc tgtgtattac agatgttgag + 781 ttgaatgtta aaggcatcat taagttttgc aagacagaga atttggaaaa ctcgctatta + 841 tcatctgcaa gattggttgg tgagacatgc attgaatttt tggaagattt attgtctaag + 901 aatttagaaa gcttgagcga agaacaaaag tcagacaaag ttattgaagg tgtcgttgaa + 961 atccatgaaa gattagaaga attgactaca ttgattgaga ctattgcatc tacgagcggt + 1021 ggcggcggcg gcggcggcgg tggcagtagc agcagcaaca gcaacaagaa gttcattgag + 1081 atcgaaaaac aaacagaaga ggagttagaa agcttggtgg acaacgaaat gaacgctgct + 1141 gcggaggtta tcaagcaagc tacattacac ttgacgtcgt tgctaaccag caaaaactta + 1201 caggacttgt cacctattga cttagaagtc aataaggcta ttttggcagc atccattgct + 1261 atcaccaaag ctatttcgat gttaatctct gcagccatcg atactcaaca tgagattgtt + 1321 gcaaatggta aaggttcaag tacaagagcc caattctaca aaaagaataa tagatggaca + 1381 gaaggattaa tctctgctgc taaagctgtt gcatctgcta ccaacttatt aattcaaact + 1441 gcggatggta atttgagtgg taagaataca cacgaggaat tgattgtggc atctaatgaa + 1501 gttgcatctt ctactattca gctagtggca gctgcaagag ttaaagctac gcagttctcc + 1561 aagactcaag acaatttgga agatgcaagt aagaaggtgt ctattgcttg caagagctta + 1621 gtaagccaag tgcaagaatt gattaataaa tctacacaat tagttaatga tgatattgat + 1681 ttctccaagt tgagtatcat tgataataga aaagaagaaa tgaaacaaca agcagaaatc + 1741 atcaagttgg agaatgcctt aggtgctgct agaaagagat taggtgatat tagaaaatat + 1801 agttatcaag atgatgatga tgatagcgat aatgatgaag aatattagat atattaatta + 1861 aattaaaatt acactcttac tcctccagta tatcactcaa taaaaaattt atttaaagaa + 1921 agaaatatta caacatacga ttaaaaaaaa caaaaaaaaa aaaaaaaaaa acaagaaaaa + 1981 caagaaaaac aaagattaaa gtttattatt tattctctct ctttctcttt atatatatat + 2041 atttacgtaa taataaatta ttattctatg gcttttgtgt ctttttgacc ctagcacgtc + 2101 tgttggtaaa ctataaaaat acttgttagt tctagatatt gcttgccaaa taaaaatata + 2161 aatttcaggt tgctgctgcc tcctccaccc ccgtcccaca caaataatat atatatatat + 2221 atatatatat atatatttgt ataaaacaac aacaacaaga agaagaagaa gaagaataat + 2281 aataataata ataataataa taataaaata ctcacccata ttctgacttg tttggcactt + 2341 aatccacatt gcttcgctat gaataatctt tcacgagaat taggtctagg atttgtatcg + 2401 aaaagaagtt ctagatattc agtagttttc ctagagtatc tcgaattatt agacgtttgc + 2461 agctggtcat gcattaaaac aactatatct acacctctat cttcaagata ctttcttaac + 2521 ttatctgtat atttgctgga tttgagagtg gattgtgata agaaaatgtc gacgatcaac + 2581 atcctttctg ttttattata aactgaatcc ttatcacaca ctttgaatcc actctttatt + 2641 gctgcatccg ataactaaat taattagtaa atgtctcata aaataatata agagaaagaa + 2701 agtatggcat accttgatta ttgtgttgag ataagtctga tagcgttcaa tcaatggctt + 2761 ataacttaat ttcaactctt ctggaatatg ttcagactct gtaagatgat aatactggac + 2821 atagctattt gtatcttttg taaaatcaga aatggagatg tcagcacttg ttctaccagt + 2881 tgtacgtatg atgcattgct ccgtgtctct taacttggcg accatttctc ccaccgtaat + 2941 agcaatcttt tcattatcac tcatgttgca gtatatttat gagttatttt ttactttttt + 3001 cgataattag aaataaactt aagaggaaac aataatattt atatgaagtt aggaagcaaa + 3061 aaagcaaact atagttaaat accatatatt tgatcagtca agaaaaaaca accaaaacca + 3121 agatttatga gaaagatgtg caaagacacg tgataaaaat tcaaattggg atcaatcgtt + 3181 ttttatgaat cacatttgat accatatttt tcatattttt tatttttttt atttcttgca + 3241 tatatatatt ttttttttta tttataataa ccttcttttc cttcaaaaat aaattatttc + 3301 aaaaattttc tttatcattt taaatcacta aattattcca atactatata ctatatcaca + 3361 aattagaact gttcattaaa atttaaccaa tacctaatat gtcaaagaaa atactatctt + 3421 tccaattacc taaagtaaat agaaataaag ataacaatat agctgttact ggatttcctt + 3481 atatggatag aaccaccaaa aaacatacaa gttatgaaac atacaatgtt attgcagtta + 3541 attgcgatgt tattgtatct accgtaatac tgaaaaagag taataaaaat aataatagaa + 3601 aagaagaacc aacaagacct aggaataaat tcatgatagc aagaagtttt attaattgtt + 3661 tattaagata caaagagaca gcgataaata gccaaacggt atcaaagata gtttcagata + 3721 tctggagaaa ctcaggtcag aactttgtga gttattttga ttatcttgcg atattcgaca + 3781 ataatcttca ccagcagata tttgataatg attttttaag attcaaaaca aaaagaacca + 3841 taaataagaa gcacttaaat atgaaaggta cctttgtcta tgaagttcct gagaaatcat + 3901 accttgcaga gcaaattgaa cctcaaacca tattaatgaa atctagaaaa gagtatcttg + 3961 atttatgtgc aagctcacta ttaggaaagg agaacacaat attagaatcg acattgaaga + 4021 ttaatgctca ttgtgataca aaactggtcg cactaccatt tgacatatta aaaaactcaa + 4081 aaaaaactca atatggaaaa cctagaaaat caaaaaaatt agatcttaaa cagccgatgt + 4141 tctcaaagtt ttctatactc tccagtaaag tgggaaagca aaaaatttaa +// diff --git a/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gff3 b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gff3 new file mode 100644 index 00000000..7154d2b9 --- /dev/null +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/locus.gff3 @@ -0,0 +1,5 @@ +##gff-version 3 +##sequence-region CM143129.1 533981 538170 +CM143129.1 MATPredict gene 533981 535828 . + . ID=44080_gdd12_MATss_MATa.gene0;Name=sla2;role=flanking_conserved +CM143129.1 MATPredict gene 536046 536944 . - . ID=44080_gdd12_MATss_MATa.gene1;Name=MATa1;role=core_MAT +CM143129.1 MATPredict gene 537379 538170 . + . ID=44080_gdd12_MATss_MATa.gene2;Name=MATa2;role=core_MAT diff --git a/db/candidates/Ascomycota/44080_gdd12_MATss_MATa/metadata.yaml b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/metadata.yaml similarity index 99% rename from db/candidates/Ascomycota/44080_gdd12_MATss_MATa/metadata.yaml rename to db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/metadata.yaml index e52a5d2b..44f6e88f 100644 --- a/db/candidates/Ascomycota/44080_gdd12_MATss_MATa/metadata.yaml +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/metadata.yaml @@ -126,7 +126,7 @@ evidence: paper''s' citations: *id001 validation: - status: needs_review + status: accepted rejection_reason: null accession_resolved: false accession_resolved_date: null diff --git a/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/proteins.faa b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/proteins.faa new file mode 100644 index 00000000..b3d20114 --- /dev/null +++ b/db/Ascomycota/Ascoideales/44080_gdd12_MATss_MATa/proteins.faa @@ -0,0 +1,6 @@ +>44080_gdd12_MATss_MATa|gene_index=0|name=sla2|role=flanking_conserved +NLLQKFKKLQQKAASAQEAIDKRDRIEKDLKAKNVELADLIKERDRARLEIDKLRGSKDSLIEKLEAEVNTLKDKLDVTERNQSSNLNSIFNAHRKEMEELETKLKERESQISEMSPESNAELQETLREKDEEIEILQQTMDDALKQLAESKRESEEAIDEQIDTVLQEHIMKLVAIIDSILQSGVKRIEDSLFELDSSMQGGNQNSSPSYLLTIIEKAGETSQEFATAFNNFIADGPSGDYAEIISTISEFTSCITDVELNVKGIIKFCKTENLENSLLSSARLVGETCIEFLEDLLSKNLESLSEEQKSDKVIEGVVEIHERLEELTTLIETIASTSGGGGGGGGGSSSSNSNKKFIEIEKQTEEELESLVDNEMNAAAEVIKQATLHLTSLLTSKNLQDLSPIDLEVNKAILAASIAITKAISMLISAAIDTQHEIVANGKGSSTRAQFYKKNNRWTEGLISAAKAVASATNLLIQTADGNLSGKNTHEELIVASNEVASSTIQLVAAARVKATQFSKTQDNLEDASKKVSIACKSLVSQVQELINKSTQLVNDDIDFSKLSIIDNRKEEMKQQAEIIKLENALGAARKRLGDIRKYSYQDDDDDSDNDEEY +>44080_gdd12_MATss_MATa|gene_index=1|name=MATa1|role=core_MAT +MSDNEKIAITVGEMVAKLRDTEQCIIRTTGRTSADISISDFTKDTNSYVQYYHLTESEHIPEELKLSYKPLIERYQTYLNTIIKLSDAAIKSGFKVCDKDSVYNKTERMLIVDIFLSQSTLKSSKYTDKLRKYLEDRGVDIVVLMHDQSQTSNNSRYSRKTTEYLELLFDTNPRPNSRERLFIAKQCGLSAKQVRIWFTNRRARVKKTQKP +>44080_gdd12_MATss_MATa|gene_index=2|name=MATa2|role=core_MAT +MSKKILSFQLPKVNRNKDNNIAVTGFPYMDRTTKKHTSYETYNVIAVNCDVIVSTVISKKSNKNNNRKEEPTRPRNKFMIARSFINCLLRYKETAINSQTVSKIVSDIWRNSGQNFVSYFDYLAIFDNNLHQQIFDNDFLRFKTKRTINKKHLNMKGTFVYEVPEKSYLAEQIEPQTILMKSRKEYLDLCASSLLGKENTILESTLKINAHCDTKSVALPFDILKNSKKTQYGKPRKSKKLDLKQPMFSKFSILSSKVGKQKI diff --git a/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/locus.gbk b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/locus.gbk new file mode 100644 index 00000000..6c299752 --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/locus.gbk @@ -0,0 +1,344 @@ +LOCUS CP048715.1 16423 bp DNA UNK 01-JAN-1980 +DEFINITION 36022_joy008_MATpf_MATa core locus segment 0 (CP048715.1). +ACCESSION 36022_joy008_MATpf_MATa.segment0 +VERSION 36022_joy008_MATpf_MATa.segment0 +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + gene complement(1..927) + /gene="dic1" + /role="flanking_conserved" + CDS complement(1..927) + /gene="dic1" + /role="flanking_conserved" + /translation="MSSIASKTESTLSSSPSSTTSHKVDVTARQKWPFWYGGFGGGVAC + LFTHPLDLAKVRLQTAPIPKPTLFQMAKSILVHDGLLGVYSGLSAGLLRQATYSLTRFG + VYEYLKENVVPADKQSSMAYLLPVSMLSGGIGGVVGNPADIVNIRMQNDTGLAPDQRRN + YKHAIDGVIRVAREEGTSALFRGLGTNLVRGVLMTSSQVVTYDVAKDWLISFGMNKDSI + STFFSASLLSGLVATTICSPADVLKTRIMNSSGTGESVVHILSTAFKNEGPSFMFRGWV + PSFVRLGPNTIITFLVVEQLKHLRVGM" + gene complement(1402..2415) + /gene="MATa2" + /role="core_MAT" + CDS complement(join(1402..1971,2044..2415)) + /gene="MATa2" + /role="core_MAT" + /translation="MVTIGAQCCRNGEAPPSISTFPILSKISFTLTKTDLPTKVFWEKK + QFPVASRLAAGANAPRSPKEITFAHLSSGTSTKSIYVYAPHNNVARPRNKFIIARTILS + RIVKTRHPWSTNDVSKIISKIWGSGNRLFLSYFDYLSFLENESHECRYPLYHYNPRSRS + TVAKASACTASAKNSELEQNMSVIFLNDPENSIKQSKQKTEKASASDIKDMSSYVKLCT + SVYEEDDCKRRGVDALHDSDDYKDHVLVLTLNEPNMKAPVDSASTNARTTYKVTKPTKK + KKTPPHLELVFSKFRSPLYGEAEDICINSSPM" + gene 2989..3688 + /gene="MATa1" + /role="core_MAT" + CDS join(2989..3289,3387..3688) + /gene="MATa1" + /role="core_MAT" + /translation="MATRDQIAYKEASEKLDALIEFSSNFSTNPTKPRYDKIMLEDPFE + KDSLLSKVPAYARAALETLISNFELSLGRVMVGQSLSHKSNQSVIKTNKPLGPRLKDPE + AYGHRIASYEVQSTTIEVTGSTSSPVFPGGGRKRNALPAKKRTSITPESKEFLERVFKA + KRTPNSTERKVIAEKCGLTPLQVRVWFTNKRMRNKEG" + gene 13298..16423 + /gene="sla2" + /role="flanking_conserved" + CDS 13298..16423 + /gene="sla2" + /role="flanking_conserved" + /translation="MSKTISDSDLISSLKKATSLDETAPKRKHVRACIVYTWDHKSSRQ + FFNQLKLLPVQGDEVQLFKTLITIHKVLQEGHGSALKEAMRNADWIEGLGRSVHGDGFK + GYGRLIKEYVVYLLRKLNFHKNHRGFNGTFEYEEYVSLVTVQNPDEGYEAILDLMTLQD + ALDDLQRLIFASISHDRKSECKISALVPLVAESYGIYKFITSMLRAIHRSTGSDEALEP + LRERYESQHARLYEFYADCSSIRYLTSLITIPRLPETAPNLISKDESDVESERPASRQT + SVATPVPEPISEQPTMGNFQQPIASQPTGVDFWNTQQNVFEAEQQRLAREAQENMLQQQ + QQAEQQRIWFEQQQAAQAEQQRLAQEQLLRDQLQNQAEGRVAELERDLLAMRQQYENDQ + LLLQQYDQRVKTLEQEIATTTQTATQQLGSKDELLNSLQEQLTLWKNKYDSLAKLYSQL + RQEHLNLLNKFKKLQQKAASAQEAIERREKLEKDLKSKNVELAGLIRERDRARLDLEKI + KGGKDSEIDKLELQIRDLTLKLDDSERSQSSNLSSVFASHKREMEDLKAKLETQSRALN + PDLEQKLKEKEEELEIVQQTMDDALQELARVQGENDEAINEQLDAVLIDHLTKLTSLVD + AILASGIKRIQDSLYELDSPMQAGNQNSSPEYLLSIIEKAQSSATDFANSFNDFIADGP + NGDHSEIIRSINEFTSSIADVLLNAKGIVRLVKTDSESNQLIAASRSTAQESEDFLMSL + LSDILEGTEEEKTEVVISGNLNVQEKLQELIVIAENLAPRSVLKNINGDLGDAVDNELN + SAASAITSAAAHLKDLLNSSFDSSIDGDINKAILSAAIAVTNSIALLIQAAIETQNEIV + TKNQGSGTRAQFYKKHNRWTEGLISAAKAVAASTKILIGTADGVLSSKNTHEELIVASN + EVAASTAQLVAASRVKATFMSKTQDTLENASKTVTSACRSLVNQVQDILNQRTNGGDQD + IDFSKLTNHENKTMEMEQQVEILKLENALASARKRLGEIRKYGYRDGDSDEE" + /gene_class="sla2_homolog" +ORIGIN + 1 tcacatacca acacgcaagt gcttgagctg ctcaacaacc aagaatgtga tgatagtatt + 61 tggacccaat ctaacgaaac ttggaaccca gcctctaaac atgaaagaag ggccctcgtt + 121 tttgaaagcg gtgctcaaga tgtgaacgac gctctcacct gttccagaag agttcatgat + 181 tctggtcttg agaacgtccg ctggggagca aatggtggta gcaacgagac ctgaaagaag + 241 agaagcggag aagaaagtgg aaatagagtc cttgttcata ccgaaggata tcagccagtc + 301 cttggcaaca tcataggtga caacctgtga cgaggtcatg agcactcctc tcaccaagtt + 361 agttccgaga cctctgaaca gagcagaagt tccctcttca cgagccactc tgatgacacc + 421 atcgatggca tgcttgtagt ttcttctctg atctggggca agacctgtat cattctgcat + 481 tctgatgtta acgatatcag ctgggttacc aacaacacca ccaataccac cagacaacat + 541 ggaaacagga aggaggtatg ccatagatga ctgcttatca gcaggaacaa cattctcttt + 601 caaatactcg tacacaccaa atcttgtgag ggaataagta gcctgacgaa ggagacctgc + 661 agagagacca gagtaaacac ccaagagacc atcatgaacc aagatagact ttgccatctg + 721 gaaaagagtt ggttttggga tcggagcggt ttgaagacga acttttgcca gatcaagtgg + 781 atgagtaaag agacatgcaa caccaccacc gaatcctcca taccagaagg gccacttctg + 841 gcgtgctgtc acgtcgactt tgtgggatgt ggtggatgat ggagaggagc tgagggtgct + 901 ctcagtcttg gacgctatgc tcgacattgc gtgaggagta atgtggtttg ggtgatgagg + 961 tgatgataag gcgcgtgctc tttattgtga gatatatcca caaatttctc ttgtagtgct + 1021 cgccgccagt agatgagaag tggtgatgga gtgttggtaa gcaacagagg aaggatggtc + 1081 aacgaagaag cacgtaaata atagtaaagg aaaactgtcc ggcttctact gcaggcttcg + 1141 cttatattgc aatttttttg cattaaattt tatcatacgg cgctcaacct tacccaattc + 1201 ggtcgcggag aaagtcggaa cgtctaagaa tcccaaaagc gaaggtgggc tctaactgac + 1261 gttcctctgg gagattatta tttgggatct tcaattacca aaagagatct tacgagaata + 1321 tgctgaggtg tatcatgtag aactctgtat tggtgtattg atgttgtacg tcttcaacga + 1381 ctagccgagc ttgcaggaaa ctcacatagg ggaactgttg atgcaaatat cctcggcttc + 1441 accatacaaa ggggacctga atttactgaa tacaagctcc aaatgaggcg gcgtcttctt + 1501 cttttttgtg ggctttgtta ccttatatgt tgtcctggcg tttgtactag cagagtcaac + 1561 cggagctttc atattaggct cgttaagcgt taatacaagc acatggtctt tgtagtcatc + 1621 tgaatcgtgg agagcatcga cccccctccg tttgcagtcg tcttcctcat aaacactagt + 1681 gcaaagcttg acataactgc tcatatcttt gatatcacta gctgaagctt tttcggtctt + 1741 ttgcttactc tgcttgattg agttttccgg atcgttcaaa aagataactg acatgttctg + 1801 ttctaactca ctgttcttag cactagcagt acaagcactg gctttagcaa ctgtgcttcg + 1861 ggaccgcgga ttgtaatgat agagtggata gcgacattcg tgtgactcgt tttcaagaaa + 1921 agagagatag tcaaaatagc tcaagaataa gcgatttcct gagccccaga tctagatatc + 1981 atgttagtat tcgaccgttg agatgctgtg cgtgtgactg aagttcatag agaatgtacc + 2041 tactttggat atgattttgg agacatcgtt agtcgaccaa gggtgtctgg tcttgacaat + 2101 ccggctcagt atagtcctgg caatgatgaa cttattacga ggacgtgcaa cgttgttgtg + 2161 tggagcgtaa acatagatcg attttgtgct ggttccggaa gatagatggg caaaagtaat + 2221 ctctttggga ctgcggggag cgtttgctcc agcagctagt cggctcgcca ctggaaactg + 2281 cttcttttcc caaaagactt tagttggtag gtctgtcttg gtgagggtga atgatatttt + 2341 cgagaggatg ggaaaggtgc ttatcgacgg aggtgcttct ccgtttctgc agcactgggc + 2401 gccaatagta accatcttga agcttggata cggatattcc tctctatcta tgctaaaatt + 2461 ctaaatcaag agtgaaactt tgttaatggg ccagacggtc tgcggtccat atgtagttta + 2521 taagtcttgc gagatgaggc gtgcatatgc tgcctttacc gatgttttgc aacacacatc + 2581 taacaaagca cttcatatca gttttgccct ccagaaggcg cttcatgaga gtccaaaaat + 2641 cataagatga tcagcagaga attcgagttg aacatgtata gtgccaagtt taagaagtcg + 2701 ggaaatattt cagtagcgaa gtctcaaata tgcgttgaca ctaccccaca caggcgaaag + 2761 agccgagtcg cctatttttc ttgcagccgg attcgcggcc gtaccttcaa tcctgtcgcg + 2821 ggcaaccacg attacactta ggcagagccc gttacatata agattgggcc ccctctgatt + 2881 gtttctctga ggcaaggtca atattgacac aacaacaatc ggagaactct tttgaatccc + 2941 aaacgaacaa aataggctag ccaatattcg actgagagat cctgcaaaat ggccacgagg + 3001 gatcaaatag cgtataagga ggcaagcgag aagcttgatg cccttatcga gttttcatct + 3061 aacttctcga ctaacccaac gaaaccgaga tatgacaaaa taatgctgga agatccgttt + 3121 gagaaggaca gtttactgag caaggttccg gcctatgcga gagcagcatt ggaaactctg + 3181 atctcaaact tcgaactatc cctcggacgt gttatggtag gacaatctct ttcccataaa + 3241 tctaaccaat cggtcataaa aactaacaaa ccattaggac cacgactcag taccaaggga + 3301 aaccatcttc aagacttata aacgtattct ggagagagag gttgatcgag cacttgttga + 3361 tggaatattg agcattccac cgaaagaaga ccccgaggcg tacggacaca gaatagcatc + 3421 gtacgaagtc cagtctacca ctatcgaagt aacgggatcg acttctagcc ctgtctttcc + 3481 aggtggaggt cgcaagcgaa atgcgcttcc agcaaagaag cgaacatcaa ttacccctga + 3541 atccaaggag tttttggaga gagtgtttaa ggctaagagg actccaaaca gtacggagag + 3601 gaaagttata gcagaaaagt gtggactcac gccactgcag gttagggtat ggttcacaaa + 3661 caagagaatg aggaacaagg aaggctgaaa acccatgtgg acctgccggc ttccttacgt + 3721 atttacaata tgaataaaat tgttgtgtaa tggcgcattt tgcttttttt tttttgaaga + 3781 ttatacgcct cactagtttc ttctaccacc tcttgtcatc tgtggcaact tgaatggcac + 3841 cttgagagag gcaaccttgt aagtcgaagc gagattcttc ttaataccga acgcctcagc + 3901 ctcagcaaca gttgcgctct tgacaatagc accaagagcc ttgaaaagac caataagcct + 3961 tgtcggtttc agagaaagtt cttgggccaa tgggacaact tcaacatgga agccggagat + 4021 gtgcatgatg gtggcaagaa ggaaacagag aagcttatcc tcgtgatgtg gatcaatctt + 4081 gaagcctctg tccttggaac gaccgaactg gccaggtctt tgaatagcga agcggtcaat + 4141 aataccatcg ataagaacct ctggtggaga gttgagctgg gttgtgagtg caagcttgtt + 4201 tgagatacgt ctgttatggt agacacccat gaggagagag gcatagtaga tgagctgtag + 4261 tttggatgtc tgggagtcgt cggtgattcc tgtgagctgt ttcttgataa attctgattc + 4321 ctggtatggc atgtactcca atctcttttc aaggtccttc tctttgatga ttggacctgc + 4381 gcggatgaat tgttgttcct tctttggaat gatgttatcg ataggataga tgtcttcaac + 4441 cgatgtagca ctaacatcgg caacgggcgt tggtctgtcg tcgagtaccg tcttctcgag + 4501 ctcttgtctc gtaggaagcg atgttgtgtg tcccttgact gtgtcaatga tgtcggcctc + 4561 agcactcacg agcttctcgg catcaattct atttctctca agatctgtga tggccttctt + 4621 ggctttcttt gtaccaaagg cctcaccgag agcagttctt tgaatgttgg cacggacgtt + 4681 gttctgtttg accttaggtc ctctaagtct tttgtgggcc ttagatgtga cgtttccgag + 4741 aaggacagga gccttgtaga gctcgacgga cttgttcacc ggatcgtaga gggcaatggc + 4801 gtagtcgctt gggtcatcat tgtttgtgat cgaatcatac tcgagtctat cattctctcc + 4861 gtggaatatc acttcatcat tcttattttt gtaaagatcg aagtgtgcat cctcaggaac + 4921 tgagaaaccc ttgaagaaag atgtgacagc cagcgtagga tcggtcgtga cgctggaaac + 4981 acgaagctca ggttgctcgt ctcttgatct cttctctccc atgacggctc tctgtaagaa + 5041 tgaggtaaca gggggtacgt tgggtgttcg agggccagaa ggtgtcactc agagagagac + 5101 cgcatcgcac cgctaaaaaa aatttgtgtc gcgagaagag ctggtggtcg gaaatcatat + 5161 acaagcacgt gccatacagc tttctgtact tgaaacttga ttgatccccc ggaaattatg + 5221 actgaggatg gtctgcacta cgcaccaaga taatgctggt gtcaccctct catctatctc + 5281 gaagtgttgc taatctcgaa ccattcacaa acctagaaca tactacatga acagcataac + 5341 tcaaaagtcg cattacgagc ttctcggagt ggagccaaca gcaagcagct tggagataaa + 5401 ggccgcatat agagagaaac tattatcaac tcacccagac aaaacgaaag aggttgtgag + 5461 tacagatatc attaatcaga tcaagcaagc ctacatcaca ctttcggaca gcaatctgag + 5521 gtctgaatat gatgccgatt tacaagagtc atttaagaag agtggactca tcagcagtgg + 5581 tgatggtctt gacatattct cgctagatga cttcaagtgt gagatgattg ggatcggtga + 5641 ggacgagatg gctgtgttca aaaaggattg tcccagatgc acaactcaag atgggttcga + 5701 gctgaacgaa gccgatttgg aacaaagtgg gacccgagat ggtgctggag gctacgagat + 5761 cattgttcag tgtgctgcct gcagtttatg gctcaaagtc aaatactacg accttgacga + 5821 tgaagacgac gacaaagatg aggaatgaga cggtccttcg gctgtccgaa agatcgtttg + 5881 gttctagagg tatctgtcaa tatggccttg atcagcataa acccgccaag tactcagcta + 5941 gtgtctaacc aaaccgaaga gttgagattg tatatcttca agactctaca ggaaataaca + 6001 ataggagaga ctccacggct acaaatgagc taagtatcaa gaagtgaatg aattgctttc + 6061 aaaccagcta tcctagctaa tcaccttatc catctctagc agatagtctt gctttctctt + 6121 cctgtagcac tgcaaataga gcgtcaccca tagtttcaag gtcagtcata agtgaaatgt + 6181 ggccctcacc acttgaaagt ttggccgcaa cagggaatcc tcttctctct ggcatcaacc + 6241 acttatgatg cacaacacca tcaccaggac catagaagaa gtcatcgtag ttaccattct + 6301 tgatatcagc gacaccatca acacgggcac ctctcacagt tggaacctga tcaccataaa + 6361 cgattgcaag tggcgggtat ttcttctctg ggtcgtactt aaggtcatcg aggaactttt + 6421 tggttctttt taatgtgcgc gagaggtatg cgtatgattc gtcaaatgag acgttaaatt + 6481 cttctgctgt cgacttgtga gaggacctca aagagagaga acgtttcatg tcaaaagagt + 6541 cgatgccttt caaaattggt gacttgacag gttccaattt tgcagctttg gcactggctt + 6601 tctggcggct cttagccact gctggtgaca agttatactc cacccaagtc tgcggatcaa + 6661 aatagtcaag gttgtactgt tcatgggttt tcttgtcgat gaagcagcgg ccatcctcag + 6721 gtaggaagac aaaactggac ctcataaaga agttgatctc aggtgttagg atcttgttgt + 6781 tgaaaagcac agtatcacca tagcggattg gaccgagcac gtttggacac attgatggaa + 6841 cacccacgta gatcaagcca cggaacagat ccggtctctg ctgcatggca tggtgggcaa + 6901 ccaagccccc cattgagtga gcgatgacaa tagcaccttt aggattcgat ccttggttgc + 6961 attttaactt ggccaagaat tcgatcacct tctgtgaact tatatcgcag gacagtctcc + 7021 agtcatatcc aaaagtatgc acattggtct taccatttgt cagcttcgcc ctcagtttcc + 7081 ttgtgatatc aactggtcca acatgattta gtgtctttgg agaatatatg tgcttctgga + 7141 cttcgatttc gtcctcatca tttgggccta tcagcaatgt cttcttgttc aaattgagcc + 7201 ctgtcttgaa agagggaatc cagagacggt tgttggtctc cgtctccttg aggacactcc + 7261 ctctgtagcc tcccagaatt accacctcac cttcaatctg gtcccacact gattccttct + 7321 tcctcttttc gtcgataagt gaagggatgc taatggcagg cgtgaatgct ttcttcactg + 7381 ctctgaacct accgttgtca acacccttga ggtccttgaa aagaaaactt tcttcgatcg + 7441 tgcttaccga ctgctgcctc ttgagtttct gtttgatctc atgccttgaa agagtagggt + 7501 cataccctcg atcatctgta tcgttgctgc caatgatagg aagattctgt ctaatctgct + 7561 ttattgatgg gaagtgtatc gcatttccac caaatggaag actgaatgtg aaaatcttgt + 7621 gctcgttctt gtaatgacta ctctcaaggt catcagtggt aacctggttg ttttccagct + 7681 gctcgtcctt ggatgaagtc tcctggtggt gatgttcagg atgtgccgaa acgacacttg + 7741 agccaccgat gaaggactgc gcagcatccg agctgacgtc cgagccatca gcgtgctgtc + 7801 ccgggaagta ctcggtgtct tcagtggcct ctgaagattg gagattgtct gacatggtgg + 7861 atcttgcctt cttcatccaa agtcgcctgg ggaagacgca gattactcaa atggcggagg + 7921 aaagttttag tggctcggat ctcacggatt accgctccgg ccgaggcgac ccgcagcaat + 7981 ggagatcaac agatgcagtc attagacaca caggcttcca gtcgaggcta cgcgagcatt + 8041 ggtggtcctc acgagaaaca gaaagggata ggctgtgctg tatgctgtaa ctagatggtt + 8101 ccctcgcctc atcaatgtgc caaggattga caaaactgtg cacccggtaa cttgtcatct + 8161 gccttcgagg tggcccgcgc acgcaaccct tcctcttctg gacaccccta caccacctcg + 8221 aatttttcac aacgtcgatt ttggtgagaa agatggggat gaatcgatgt gttgttccac + 8281 agagtgactt tcgttccttc tgtactctat cgtaatgatg cagaatggtc ttcagcgtaa + 8341 gttataatgt ctttcccttt tccttgttgg cgggagcctt taactaacaa gaaatgcagc + 8401 catcagaaga tgtttagcga cagcggcatc atcatcacca gcttcagtgt cacttgagag + 8461 catcaaggcc ggtcttctgc tcgctcgtaa cccaatcgtc accccagatc tcacacctct + 8521 cgaaaatgca tacttcaact accaggagga acttgaacgc agactgatgt ggacattccc + 8581 acactactac tacttcaaga agggttccct cgccgaacgt cgtttcttca aggcacagcg + 8641 tggacctgta tctaagcagc caggtgtctt ctactcgaaa ggtgtgcctg atatcgtgca + 8701 caaccgtgaa cgtcgctcga agcaggaggt tgtgattcca aaggatgaat acgaagaatc + 8761 cgcaatgtcg gacatttcga gaccagtttt accaaactct cgtgttacaa aagcagacga + 8821 acagggtgat ttgacaagtt tggaaagaca gctaccgaga acactttatc ttcttgtaaa + 8881 ggatggaaag cttggctgga agctgccaag tttcgacgtt acagagggta caccattgca + 8941 cagagtcgcc gaggacggtt taagacaact tggtggtgac cagattaaca catggactgt + 9001 cgctcgttct ccaacggcag tcttaaagtt tgatggctgc tctttggctc cagtggatgc + 9061 tcagaagaag ggtctctcca gagaattcat cattaagtcc aatatcctct caggtgcatt + 9121 caagccacag aaggttgagt atgcttggtt gactcgtgag gagattgaag agaaggtgag + 9181 tggggaatac ttccaggcaa ctgagttttt gttctctcgt gtctgaattt ctgcaaaaga + 9241 ggaggtttga gggcttgcta catgtatata aacctagcat actacgtttt taatgacatt + 9301 caacattcat acagatcatc actagagcct gatggtgctg tttgtaatag ccgacgaaca + 9361 atctctagat caattggtac gttcaacacc agtgaaaaca gacccatcac catttgtgta + 9421 aagatatgag attgccactg ggctgaatct gaactttcca tcgagattag ttccagaatt + 9481 acatcctggg agcgacacga cctctttacc ggtctctatg ttgaagatct tcgcagagtc + 9541 tgcctcttga taagtcacac caagatggac gccatcagca aagagatcca ttctatgaat + 9601 tgactgatca acagttccaa tggttcgggc caatgatagg tctgtggtgg accagagtga + 9661 gatgatgccc tcgtgagaac cagcagcgat gtagcgaccc cgtgggtcca tacacaggga + 9721 attgatccta gaacggtgac cctcaagtat gcaagcattg gcaaaggcac catcaccgcc + 9781 cttgataaca acagagatct taccggtcac aagaccgaca aaaatggcca cggagttgtt + 9841 gctccaacaa agcgacgata cgccatcctt tccatactct aaggtctgca actgttcgta + 9901 tgtgttagca ttatagatca caagtgtgtg tgcttgtgtg atgacagcca agtattctgc + 9961 attcggagag tatgcaatat caactggtgt tgtctctgcg gtctcaatct catgcattag + 10021 cttaccagtc acaatgttcc aaatatgaat gctcttgtcc tttccaattg tggctaaaat + 10081 ctcatcgctt tctggtctcc atgcaattcg tgttaccata cattcatgta atttcttcat + 10141 aacggttggc tgtcttggtg ttggatcacc attgttcttg ttcacgttcc atataacgag + 10201 tataccatct gtacgtgaca cagcaatacg tgcaccgttg taactccatt cagcagcagt + 10261 tatttcgaag ccacggtgag tttcacgatt tggtttgaca agctctatat gattcatctt + 10321 ttccaacggc tgttggcttg gtcccgatgg aagcaccgtc ttcgatttct tgctagtaga + 10381 gggccttgat tggcgtgtag ttggggctgt atctcgaggc aggtcatctc ttctcgaagt + 10441 gtgacgagta gcatcagcac gatcactcac acggttacgg tccgaagctt tatctcctcc + 10501 gcggattgct ccacggtcat tcggtctacc agtgtctctc gtgccatggc cgtctctatc + 10561 acgatcatcc cttgagggtc tgtctctgtc tctttctctt tcccggtccc ggagatccct + 10621 gcctctgtca cctctatcac ctctgttacc tcttccttct cctctaccac ttcctcgagc + 10681 gtcacctctt tcatgacctc gatcaccacg aacacctcgg ccaagtctgt catcagcacc + 10741 cctatcagat cttcttagag tggacattgt ctcaacactc tctgctcctc ttctgcttaa + 10801 ctatccagga actgatgttg tacaattctg agttcccagt gtttcgaggt agtgaatgtt + 10861 atcggaaaaa tacagaaggc gcgcatcaag aagtcagctg cgggttacta aatcgcatca + 10921 ctaccaagag aagatcacct tctaacagat ccttctttga cccttccaac aatgaattcc + 10981 caacggcata caccctatat tcgagctgac tcctccagtg tgctaccgag gacgctgggc + 11041 cgtcgaccgc ccggccctgt catcccgaac ctgggagcta agcaccatca cagctctctt + 11101 aacaaacccc ctcgatcatc tcgacagcat gatgaacgag agtcttcatc acctcccaga + 11161 ccacacagct cctttgcccc acctatcaac tccaattcct caaccacgtc cgcctctagt + 11221 cccaaaaaaa acgttaccga tgggcgggac cctgccaact tgatctccac aacgtacgcc + 11281 tactgcggca acaggaaacg actgcagaat ccaagggatg tcgaaaataa aaagagacta + 11341 agagagatgg aagcaaaaaa tgctcctggg gaaccgccgg tggctctaca gtctaaaagg + 11401 tttcaacagg aagcgtcagt tgtcaaggcg aatgatgggg acacctttga gcctctaacg + 11461 tcttcgtctg gtgtgctatc acaagagaca aacaaccgaa aaagaaacat actttcttct + 11521 ttggagaaac gtgccccaat aatgtctcca ggtgaagagg aacaagaagg ttcaaggcat + 11581 agaattcctt caattcgatc agacgctgac ttcatgaact ccattcgtgc tccaaggatc + 11641 cccagtcgag ctgctcaagc tgactacgag aagcacactg ctagcgctcg tctacaacat + 11701 aaacgtgagg atacagaggt caagggaatg gatcaacaat tgcatgatga cacgaattca + 11761 gggaaaaggg aaactaaaaa aggggaagat gtcgctccaa taccaaggaa gagggcgctg + 11821 attaaaggtg tgaaatcttc tgctaagaaa agcacaggat cgacgagtga accattgggt + 11881 gatattaggg gcatgctgtc tggaaagaaa aagtcaggga gtaagtcacc tcaccgccgt + 11941 ggcaccgaag acttgggtat tgaagatcca ggtggtgaga cacacaagca ccggggccgt + 12001 catgaaggtt cagtggggga cgctctaggc tcggatgaag agttgttcaa cttcgactcg + 12061 cctgggccat cctcgcagga attgcgttcc gccaaagagc ttctcaagga tgatgaaagt + 12121 cataaagcta tgaagtctgc aattgacagt ctctcaataa aaagcggcat attgaacaaa + 12181 cgattcaaac ccgatggtga tgactatctt gagatgatga agcgcaggtc tgtctttgac + 12241 ccaaagcagt ctcgaaacat tgagtacgct gacttgaatc aggatatcag tgttggtcta + 12301 caaaatgagt ttgaagaggt tgacgagcag gcaaacgagg tcaaacagca agctattgtg + 12361 aaaaggaagt atggaaatga ggagtttccg ggaacattaa ccctcggtga gattgagcaa + 12421 aaggtcaacc agcacatgga ctgcattcca aaaattctca acggtcgtct tgactccact + 12481 tacctgcaaa aagcgaaagt attcatgcac gactctggag caacaatctt gtccaatgca + 12541 gatctccaaa gacctagttt caagcagttc tttagtggat tttatggttt gaaaagacaa + 12601 ggggctattg ctaatctaat cagaagaaag taccataaac ttatcaagga gaaggccgag + 12661 cacaacaggg ttatccaatt ttggtccatc gatacattca cattacacat tctcgctcca + 12721 gaggttgctg caagaatggc cgccgaggat atgagtatca gcatcgatga ggctatcaga + 12781 gtgttggata gaacagttga ttatggtcaa tacatcgctg atttggtccc ttgtgaatga + 12841 aatgacagcc tgcactttca aatgtgcatt tatatagaaa ttttctcaac aaaggaagga + 12901 tccattctta aaaccaaaac gataacgtta ctagacatat ttgggccaaa atcagacacc + 12961 ttcctctttg ggaagtttcc ccgtcacgat ttcgcgaaca gcgcggcgcg ggcgcagtct + 13021 gccgcgatcg gattggttat ggaattgaca acaggatacc aagcataggc tgtcaccacc + 13081 aatatcagta cagaaggtca cccatcgttg atcaatcgtg agttcccttc acactctttc + 13141 tgagctgggc atgctgctat tggccctgtc tcttttccgg aagttacagc cggaattgac + 13201 tgaaggttca gacagccgcc ggccgataac aacgacacct tactcaatgc atacccgatc + 13261 ttatctatac ttcagatgac taacaatact tgaaaagatg tcgaagacaa tctccgactc + 13321 cgaccttatt tcatcgttga agaaggctac ttctctcgac gaaactgctc caaagagaaa + 13381 acacgtcaga gcatgtattg tctacacctg ggaccacaag tcctccagac agttcttcaa + 13441 ccagctgaaa ctgctccctg ttcagggtga tgaagttcaa ctctttaaga cactgatcac + 13501 cattcacaag gttctccagg agggtcatgg ctctgctttg aaggaggcca tgcgtaatgc + 13561 tgattggatc gagggcctag gaagatcagt ccatggtgat ggattcaagg gctatggaag + 13621 actcatcaag gaatacgtgg tctatttgtt aagaaagctc aactttcata agaaccaccg + 13681 tggattcaat ggtacattcg agtatgaaga gtatgtctcc cttgttaccg tgcaaaaccc + 13741 tgacgaaggt tacgaggcca ttctcgatct catgactttg caagatgctc tggacgatct + 13801 tcaaagactg atctttgcta gtatctccca tgacagaaag tctgagtgta agatctctgc + 13861 tcttgtgcca ttggttgccg agtcatacgg tatctacaag ttcattacgt ctatgctcag + 13921 ggctattcac cgctccacgg gatctgatga ggcattggaa cctttaagag aacgctatga + 13981 gtctcaacat gccagactct acgagttcta tgctgactgc tcctcaatcc gctacttgac + 14041 ttccttgatt acaatcccaa gacttccaga aacagcacca aacctcatct ctaaagatga + 14101 gagtgacgtg gaaagtgaaa gaccggcctc aagacaaact tcggtcgcta caccagttcc + 14161 agaaccaatc tcggaacagc caactatggg taacttccaa cagccaattg catctcagcc + 14221 aactggtgtt gatttctgga acacccaaca aaacgtgttt gaagccgaac agcagagact + 14281 tgcaagagaa gcccaagaaa acatgcttca acagcagcaa caggctgagc aacagcgtat + 14341 ttggtttgaa cagcaacagg ctgctcaggc tgaacagcag aggctagccc aggaacagct + 14401 tttgcgcgat cagttgcaga accaggcaga gggaagagtc gcagagttag aacgtgattt + 14461 gctcgcaatg aggcaacagt acgagaacga tcagttgtta ttacagcagt acgatcaaag + 14521 agtcaaaacc ctggagcagg aaattgccac cacaacacag actgctactc agcaacttgg + 14581 ttctaaggat gagcttttga acagtttgca ggaacagttg actttatgga aaaataagta + 14641 cgattctttg gctaagctgt actcacagtt gagacaggag catttgaacc tgttgaacaa + 14701 gtttaaaaag ttacagcaaa aggctgcctc ggcccaggaa gccatcgagc gtcgtgagaa + 14761 gcttgagaag gacttgaagt ctaagaacgt tgagctggca ggtctgatca gagaacgtga + 14821 cagagctaga ttggacttag agaaaattaa gggtggtaaa gacagcgaga ttgataagtt + 14881 ggagctccag atcagggacc tgacattgaa gcttgatgac tctgagagaa gccagtcctc + 14941 gaacttatcg tcggtgtttg cttctcacaa gagagagatg gaagacttga aggcaaaact + 15001 tgagacacag tctcgtgctc tgaacccaga ccttgaacag aagctcaaag agaaggaaga + 15061 ggagcttgag attgtgcagc aaaccatgga tgatgccctt caggagcttg ccagagtcca + 15121 gggagagaac gatgaggcta ttaacgaaca acttgatgca gtcctgattg atcacctcac + 15181 taagctcaca tcattggttg atgccatctt ggcttccggt atcaaaagga ttcaggactc + 15241 cttgtacgag ctggactctc caatgcaggc tggtaatcaa aactcatcac cggagtactt + 15301 gctttccatc atcgagaagg cccaatcgtc cgctaccgac tttgccaact ctttcaatga + 15361 cttcattgcc gatggtccaa atggtgatca ctctgagatc atcagatcca ttaacgaatt + 15421 cacatcttct atcgccgatg ttctgctcaa tgccaagggt attgtgagac ttgtgaagac + 15481 tgatagtgaa tctaatcagc tcattgccgc ctccagatct accgctcagg aatctgagga + 15541 cttccttatg tctctcctct ccgatatcct tgaaggaact gaggaagaga aaaccgaagt + 15601 tgttatttcc ggtaacttga acgtccaaga gaagcttcaa gaactcattg ttattgctga + 15661 gaaccttgca ccaagatctg ttctcaagaa catcaatggt gatcttggtg atgcagttga + 15721 taacgaattg aactctgccg cttctgctat cacatctgct gctgctcatc tcaaggatct + 15781 gcttaactcc tctttcgatt catccatcga cggtgatatc aacaaggcca tcttatctgc + 15841 tgctattgcc gttaccaact caatcgctct tttgattcag gccgccattg agacacagaa + 15901 tgagattgtg accaaaaatc agggaagtgg tacccgtgcc cagttctaca agaaacacaa + 15961 tagatggact gagggtctca tttcagctgc taaggctgtt gctgcttcca ccaagatctt + 16021 gattggtact gcggatggtg tgttgagttc taagaacacc catgaagaat tgattgtggc + 16081 ttccaatgaa gtggctgctt ccactgccca acttgttgct gcctcaagag tgaaggctac + 16141 attcatgtcc aagacgcagg atacgttgga gaatgcttcc aagactgtta cgtctgcctg + 16201 cagatctttg gtcaaccaag ttcaggatat tttgaaccag agaacgaatg gtggtgatca + 16261 ggatattgac ttctcgaagt tgacgaacca tgagaacaag actatggaga tggagcagca + 16321 agtggagatt ttgaagttgg agaatgcctt ggcttccgct agaaagagat tgggtgagat + 16381 cagaaagtat ggatacagag atggtgacag tgatgaagag taa +// diff --git a/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/locus.gff3 b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/locus.gff3 new file mode 100644 index 00000000..0941eef3 --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/locus.gff3 @@ -0,0 +1,6 @@ +##gff-version 3 +##sequence-region CP048715.1 628449 644871 +CP048715.1 MATPredict gene 628449 629375 . - . ID=36022_joy008_MATpf_MATa.gene0;Name=dic1;role=flanking_conserved +CP048715.1 MATPredict gene 629850 630863 . - . ID=36022_joy008_MATpf_MATa.gene1;Name=MATa2;role=core_MAT +CP048715.1 MATPredict gene 631437 632136 . + . ID=36022_joy008_MATpf_MATa.gene2;Name=MATa1;role=core_MAT +CP048715.1 MATPredict gene 641746 644871 . + . ID=36022_joy008_MATpf_MATa.gene3;Name=sla2;role=flanking_conserved diff --git a/db/candidates/Ascomycota/36022_joy008_MATpf_MATa/metadata.yaml b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/metadata.yaml similarity index 99% rename from db/candidates/Ascomycota/36022_joy008_MATpf_MATa/metadata.yaml rename to db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/metadata.yaml index 92f9e5be..95303d63 100644 --- a/db/candidates/Ascomycota/36022_joy008_MATpf_MATa/metadata.yaml +++ b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/metadata.yaml @@ -151,7 +151,7 @@ evidence: MATalpha1 (alpha box), at the same DIC1-SLA2 position in different strains' citations: *id001 validation: - status: needs_review + status: accepted rejection_reason: null accession_resolved: false accession_resolved_date: null diff --git a/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/proteins.faa b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/proteins.faa new file mode 100644 index 00000000..d43a3703 --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36022_joy008_MATpf_MATa/proteins.faa @@ -0,0 +1,8 @@ +>36022_joy008_MATpf_MATa|gene_index=0|name=dic1|role=flanking_conserved +MSSIASKTESTLSSSPSSTTSHKVDVTARQKWPFWYGGFGGGVACLFTHPLDLAKVRLQTAPIPKPTLFQMAKSILVHDGLLGVYSGLSAGLLRQATYSLTRFGVYEYLKENVVPADKQSSMAYLLPVSMLSGGIGGVVGNPADIVNIRMQNDTGLAPDQRRNYKHAIDGVIRVAREEGTSALFRGLGTNLVRGVLMTSSQVVTYDVAKDWLISFGMNKDSISTFFSASLLSGLVATTICSPADVLKTRIMNSSGTGESVVHILSTAFKNEGPSFMFRGWVPSFVRLGPNTIITFLVVEQLKHLRVGM +>36022_joy008_MATpf_MATa|gene_index=1|name=MATa2|role=core_MAT +MVTIGAQCCRNGEAPPSISTFPILSKISFTLTKTDLPTKVFWEKKQFPVASRLAAGANAPRSPKEITFAHLSSGTSTKSIYVYAPHNNVARPRNKFIIARTILSRIVKTRHPWSTNDVSKIISKIWGSGNRLFLSYFDYLSFLENESHECRYPLYHYNPRSRSTVAKASACTASAKNSELEQNMSVIFLNDPENSIKQSKQKTEKASASDIKDMSSYVKLCTSVYEEDDCKRRGVDALHDSDDYKDHVLVLTLNEPNMKAPVDSASTNARTTYKVTKPTKKKKTPPHLELVFSKFRSPLYGEAEDICINSSPM +>36022_joy008_MATpf_MATa|gene_index=2|name=MATa1|role=core_MAT +MATRDQIAYKEASEKLDALIEFSSNFSTNPTKPRYDKIMLEDPFEKDSLLSKVPAYARAALETLISNFELSLGRVMVGQSLSHKSNQSVIKTNKPLGPRLKDPEAYGHRIASYEVQSTTIEVTGSTSSPVFPGGGRKRNALPAKKRTSITPESKEFLERVFKAKRTPNSTERKVIAEKCGLTPLQVRVWFTNKRMRNKEG +>36022_joy008_MATpf_MATa|gene_index=3|name=sla2|role=flanking_conserved +MSKTISDSDLISSLKKATSLDETAPKRKHVRACIVYTWDHKSSRQFFNQLKLLPVQGDEVQLFKTLITIHKVLQEGHGSALKEAMRNADWIEGLGRSVHGDGFKGYGRLIKEYVVYLLRKLNFHKNHRGFNGTFEYEEYVSLVTVQNPDEGYEAILDLMTLQDALDDLQRLIFASISHDRKSECKISALVPLVAESYGIYKFITSMLRAIHRSTGSDEALEPLRERYESQHARLYEFYADCSSIRYLTSLITIPRLPETAPNLISKDESDVESERPASRQTSVATPVPEPISEQPTMGNFQQPIASQPTGVDFWNTQQNVFEAEQQRLAREAQENMLQQQQQAEQQRIWFEQQQAAQAEQQRLAQEQLLRDQLQNQAEGRVAELERDLLAMRQQYENDQLLLQQYDQRVKTLEQEIATTTQTATQQLGSKDELLNSLQEQLTLWKNKYDSLAKLYSQLRQEHLNLLNKFKKLQQKAASAQEAIERREKLEKDLKSKNVELAGLIRERDRARLDLEKIKGGKDSEIDKLELQIRDLTLKLDDSERSQSSNLSSVFASHKREMEDLKAKLETQSRALNPDLEQKLKEKEEELEIVQQTMDDALQELARVQGENDEAINEQLDAVLIDHLTKLTSLVDAILASGIKRIQDSLYELDSPMQAGNQNSSPEYLLSIIEKAQSSATDFANSFNDFIADGPNGDHSEIIRSINEFTSSIADVLLNAKGIVRLVKTDSESNQLIAASRSTAQESEDFLMSLLSDILEGTEEEKTEVVISGNLNVQEKLQELIVIAENLAPRSVLKNINGDLGDAVDNELNSAASAITSAAAHLKDLLNSSFDSSIDGDINKAILSAAIAVTNSIALLIQAAIETQNEIVTKNQGSGTRAQFYKKHNRWTEGLISAAKAVAASTKILIGTADGVLSSKNTHEELIVASNEVAASTAQLVAASRVKATFMSKTQDTLENASKTVTSACRSLVNQVQDILNQRTNGGDQDIDFSKLTNHENKTMEMEQQVEILKLENALASARKRLGEIRKYGYRDGDSDEE diff --git a/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/locus.gbk b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/locus.gbk new file mode 100644 index 00000000..2c115794 --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/locus.gbk @@ -0,0 +1,387 @@ +LOCUS CM115473.1 19515 bp DNA UNK 01-JAN-1980 +DEFINITION 36022_tbrc-4498_MATpf_MATalpha core locus segment 0 (CM115473.1). +ACCESSION 36022_tbrc-4498_MATpf_MATalpha.segment0 +VERSION 36022_tbrc-4498_MATpf_MATalpha.segment0 +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + gene complement(1..927) + /gene="dic1" + /role="flanking_conserved" + CDS complement(1..927) + /gene="dic1" + /role="flanking_conserved" + /translation="MSSIASKTESTFSSSPSSTTSHKVDVTPRQKWPFWYGGFGGGVAC + LFTHPLDLAKVRLQTAPIPKPTLFQMAKSILVHDGLLGVYSGLSAGLLRQATYSLTRFG + VYEYLKENVVPADKQSSMAYLLPVSMLSGGIGGVVGNPADIVNIRMQNDTGLAPDQRRN + YKHAIDGVIRVAREEGTSALFRGLGTNLVRGVLMTSSQVVTYDVAKDWLISFGMNKDSI + STFFSASLLSGLVATTICSPADVLKTRIMNSSGTGESVVHILTTAFKNEGPSFMFRGWV + PSFVRLGPNTIITFLVVEQLKHLRVGM" + gene 5895..6812 + /gene="MATalpha1" + /role="core_MAT" + CDS 5895..6812 + /gene="MATalpha1" + /role="core_MAT" + /translation="MIEVPLGALLALSDPYTFSSQGKMTGISKIVKKRNKQGVEVLRFR + GCPASKVRGTRGAQGLHQCMERNNSMTSGEASVTIFAATKLPDIPSIPYTLQKQLDELR + SQTTTSDRRKIKRLPQLQVSVNRDDTVIKRATKTKLNGFMAFRAFHSREISTIEHQRGI + SMSLATVWASDPPSQLVWQRFAAEYNQTVRYEPDLSFVDWLLSMSKGVDSKIDEPTKRT + LSRAARVENIYVEKDGNLRHNTDPYALELQNKDVNNRYHNYLKERLQSAIDRPIVTLAS + DPSLSRSYIDPLVYEISSGTYEKS" + /gene_class="alpha_box" + gene 16390..19515 + /gene="sla2" + /role="flanking_conserved" + CDS 16390..19515 + /gene="sla2" + /role="flanking_conserved" + /translation="MSKTISDSDLISSLKKATSLDETAPKRKHVRACIVYTWDHKSSRQ + FFNQLKLLPVQGDEVQLFKTLITIHKVLQEGHGSALKEAMRNADWIEGLGRSVHGDGFK + GYGRLIKEYVVYLLRKLNFHKNHRGFNGTFEYEEYVSLVTVQNPDEGYEAILDLMTLQD + ALDDLQRLIFASISHDRKSECKISALVPLVAESYGIYKFITSMLRAIHRSTGSDEALEP + LRERYESQHARLYEFYADCSSIRYLTSLITIPRLPETAPNLISKDESDVESERPASRQT + SVATPVPEPISEQPTMGNFQQPIASQPTGVDFWNTQQNVFEAEQQRLAREAQENMLQQQ + QQAEQQRIWFEQQQAAQAEQQRLAQEQLLRDQLQNQAEGRVAELERDLLAMRQQYENDQ + LLLQQYDQRVKTLEQEIATTTQTATQQLGSKDELLNSLQEQLTLWKNKYDSLAKLYSQL + RQEHLNLLNKFKKLQQKAASAQEAIERREKLEKDLKSKNVELAGLIRERDRARLDLEKI + KGGKDSEIDKLELQIRDLTLKLDDSERSQSSNLSSVFASHKREMEDLKAKLETQSRALN + PDLEQKLKEKEEELEIVQQTMDDALQELARVQGENDEAINEQLDAVLIDHLTKLTSLVD + AILASGIKRIQDSLYELDSPMQAGNQNSSPEYLLSIIEKAQSSATDFANSFNDFIADGP + NGDHSEIIRSINEFTSSIADVLLNAKGIVRLVKTDSESNQLIAASRSTAQESEDFLMSL + LSDILEGTEEEKTEVVISGNLNVQEKLQELIVIAENLAPRSVLKNINGDLGDAVDNELN + SAASAITSAAAHLKDLLNSSFDSSIDGDINKAILSAAISVTNSIALLIQAAIETQNEIV + TKNQGSGTRAQFYKKHNRWTEGLISAAKAVAASTKILIGTADGVLSSKNTHEELIVASN + EVAASTAQLVAASRVKATFMSKTQDTLENASKTVTSACRSLVNQVQDILNQRTNGGDQD + IDFSKLTNHENKTMEMEQQVEILKLENALASARKRLGEIRKYGYRDGDSDEE" + /gene_class="sla2_homolog" +ORIGIN + 1 tcacatacca acacgcaagt gcttgagctg ctcaacaacc aagaatgtga tgatagtgtt + 61 tggacccaat ctaacgaaac ttggaaccca gcctctaaac atgaaagaag ggccctcgtt + 121 tttgaaagcg gtggtcaaga tgtgaacgac gctctcacct gttccagaag agttcatgat + 181 tctggtcttg agaacgtccg ctggggagca aatggtggta gcaacgagac ctgaaagaag + 241 agaagcggag aagaaagtgg aaatagagtc cttgttcata ccgaaggata tcagccagtc + 301 cttggcaaca tcataagtga caacctgtga cgaggtcatg agcacacctc tcaccaagtt + 361 agttccgagg cctctgaaca gagcagaagt tccctcttca cgagccactc tgatgacacc + 421 atcgatggca tgcttgtagt ttcttctctg atctggggca agacctgtat cattctgcat + 481 tctgatgtta acgatatcag ctgggttacc aacaacacca ccaataccac cagacaacat + 541 ggaaacagga aggaggtatg ccatagatga ctgcttatca gcaggaacaa cattctcttt + 601 caaatactcg tacacaccaa atcttgtgag ggaataagta gcctgacgaa ggagacctgc + 661 agagagacca gagtaaacac ccaagagacc atcatgaacc aagatagact ttgccatttg + 721 gaaaagagtt ggttttggga tcggagcggt ttgaagacga acttttgcca gatcaagtgg + 781 atgagtaaag agacatgcaa caccaccacc gaatcctcca taccagaagg gccacttctg + 841 gcgtggtgtc acgtcgactt tgtgggatgt ggtggatgat ggagaggagc tgaaggtgct + 901 ctcagtcttg gacgctatgc tcgacattgc gtgaggagtg atgtggtttg ggtgatgagg + 961 tgatgataag gcgcgtgctc tttattgtga gatatatcca caaatttctc ttgtagtgct + 1021 cgccgccagt agatgagaag tggtgatgga gtgttggtaa gcaacagagg aaggatggtc + 1081 aacgaagaag cacgtaaata atagtaaagg aaaactgtcc ggcctctaat gcaggcttcg + 1141 cttatattgc aatttttttg cattaaattt tatcatacgg cgctcaacat tacccagttc + 1201 ggtcgcggag aaagtcggga ctgatgcact gcggtatatg aatattatgt atttcataaa + 1261 aaacacacta tcgaacatag ttagcagcaa tttaaatgaa aaggggattc tgcatctcgg + 1321 aaccaggctg ttgaatatgt gatagcagct gggattacgg ggtgagccga atcgcttgac + 1381 gtccaacacc tcgtctacaa aaaagatgaa acatccacct tacacatttg agaaatcgct + 1441 catacattga cgacttattc tggtttcatc tgtttgtaac cgttgtaaca acggataccc + 1501 aattattgat cctggcttta taagagtcag aatgtatccg gaacaatcct cccagcaacc + 1561 caaggtcgct caaacccttc caacaacatg ttgtcccacc gccatcagaa agctgctctc + 1621 tccaaactgc aaagaagtgc ttacgcacat tacccaacac cacattcgcc aatatctcta + 1681 acaccaaata gatcaatatc gtctcttccg gcctcgaaga tgcttccagc tgtcaattac + 1741 gttcgccaag cagatccaga tgcgattgtt cttctcggtc atggtgaatc ttaccatgct + 1801 ttcggcagag tcgatactaa tctgattaaa ggaatggtat cagctggcaa tgcaagcgag + 1861 atactctacc gtgatgatgg actgacacaa tggagattca agtcatctcg actcccgcat + 1921 aacacttctt ggctggtgaa ggagttgaac aggccagttg tcaccttgga atggaacgaa + 1981 tatgctacta gtttcctaca gccattgcgc aacgactccc attggcattt cctatcgaga + 2041 accattcctg atggccactc agaccatgaa ttctctgttc attctgaatc tcaaaacatc + 2101 atagtaattg gtatacaggg gaagattctc aaggggatca aaacaggtga aaagtcacag + 2161 agacgtgttg gtatcacttg ctttgaccca acaaacggat cgatgtctgt tcagggcact + 2221 tctcttgctg atttgagatc ccatatcgtg agctttcgtc ctcgggctat tgttctggac + 2281 tccagtctga ttgggacata ccgggacatc attggcacag ctcttctagg ttcaccagaa + 2341 gttaagttta ccaatatgcc tcccgtgttg ggctcgctac aactccttaa tgatttcttt + 2401 gatgtctctg gtgaaatttg gaggaagtgt ttcgatgatt acgagctgta ctcactgaag + 2461 gctgctgtgg agttcattaa gaagacacag aaatcaacgt ctgcagtatt ccaactacca + 2521 tcgagggaac tgtcgtcaca atggaccgtg ttattggaca aagaaactat cagttccttg + 2581 aacctgggct ccaccgggag tcactatatg aattcctcct ggttacttca aagatcaatc + 2641 aagactgcta ctgttggtgg ttctcgaatg ttgtacaagt ctatcttgag gccaactagg + 2701 atagtcagtg agattttgtt tcgtcagagg gcggttcaat ccatcattaa aaggaaacat + 2761 acacgtcaga agctgagctc agagctctcg agtttaccag acatcccatt gctactacag + 2821 aaactcaaga tctatccgga atcagaagac cttgtcagta ctatactaca ctccatcgac + 2881 atcatctcgt cacttgctcc catcgcctcc aagttttaca tgaacggtcg ccagcaagac + 2941 gctgactttg atgatggtga cttgatttac cgcattccat ctgcaaaacg tttggaggaa + 3001 ctcagagaca gggcccgttc ccttctcaat gctagcgaca caatgcatgg tgttgtttcc + 3061 tcgaatacaa gcattgaatg caatgatcgg aggacacaga aagctacttt ggtgaatggt + 3121 gttgattgtg gacctaatag gaacacttct ttttctcact ctgtgaaaaa tcagacaggt + 3181 gatgtttctt tggaaacctt tatggtcagc gatgatgctg aattgaacac tgagtcacct + 3241 tctaatctca caacagtgct agacacccgt actgtgagtg aacacaccca gcctaagggg + 3301 ctaggagaga ttaccagctc atctttggac taccgagatc tacatgctac acaccgcatc + 3361 gacaagttgg ccggtcagat aagtgaatta caccctggcc accctctacc aagagccaaa + 3421 gtgattgcca actgctcggc tgaaatatta agacataagg agctcattct actcttctcc + 3481 cgactcttgt cacgtttgga catgctgctg tcgtttgcca acgtggctat ccaacatgac + 3541 gacacaagac ctatcgtgga tcccagcaga accaactttg agattcactt gaaggacaaa + 3601 gatttcaatg ctgctgctga tccattgttg atgtcaaact catcatcagt attgtggact + 3661 aagggagaga gaaaaaccgt ggcagagctt tacgggctgt acgccagtat catcttattg + 3721 gcgcactcag gtgcttatgt tccagccaag tctgctaaca ttggtgttgt cagccacatg + 3781 ctttgtcaac tccgctctac aaatcctttc ctattacatt cagcgcttga gaagtctatg + 3841 gatggccgtc gtatcatcat gtgcgacgct ctgcctgacg atttcgaaga ctatggctca + 3901 gccgatgaca gattggaaag ctaccaagaa acactggcga ctatgaatgt gggaactaac + 3961 cgactgcttc taagatatca ctgagtttaa atattttgct tataatactg ataatggtat + 4021 gatacaatta gtcaatgctc tctgtgcaaa ccttgcagta tgctacgcta agggaccttc + 4081 tcgttgaaac atgcagctag ttgacagtca aaccaaaagt tattgagtac tatgctacat + 4141 atctcaaagg ggtcatggaa tcgaagtggc acgcggaata gattgctcat atgttcacat + 4201 gatacttcgg cacagtaatc cagagatagt ttctggcgat ctattggcca atataaatca + 4261 catgaaccga ataccttttt gtcatggatg tattgcaatc gccctcgtag agtgcatgga + 4321 gttggcgtga catttcacct tacaggggct aggctgacac atctgcatct gaagtggccc + 4381 caaagatatc ggtcagctct gtggatacaa aagatgtctt ttgttttctt ctagtaccaa + 4441 tgttagtcaa tcatatgaac cccttaaaga gcttaaaaac cacgtacctt ttgttggaaa + 4501 ccctgagtgt gttagttgga tgacaaaatg gcagttgggg gcatttgaga cttaccagtt + 4561 acggatttgg acctttgtga ggccagtttc ggacaccagc atggatagca catcttcctt + 4621 gaggtaggct ttttggtttt gatggctgta cctgcaccac agtattagta tatcagcggt + 4681 ctcagggaaa gaaaaaaaaa aaaatattga cggacttacc acttttcaag tatctctact + 4741 ttttctttct ccagtctctt ctttttgatt ccctgtgttt gcctatgaca catgatgtcc + 4801 tgagtcaata catcaaaaat catagccttg tcagctcctt taacggaggt atgaaagtcc + 4861 atgatgtgat cgttgaggct ctgtcgttca tcaaggagga gctttgcttt gcgacccaat + 4921 acttcaatat cacccaactc atcttggaag caagtcagtt cagtctcaga gaggccatga + 4981 agccgctcga tgtcctttca tcaatgttag aaagtaccag gtgaaatcag aggagaaatt + 5041 taactcacat cgagagctat tcctagctcg tgattgaagc gcccgacatg aaactcggga + 5101 gaagcctgaa gtgtattaac caagtcaatc aaccgacttc tcaatagagc gattctgaga + 5161 tttgttagac cggagttgaa gaaaggtgat tgaagaacga gtaacagaca tactctttgg + 5221 aaacactact ttctcccgta tctaaggata acagggaagg gattgcacat ttgttgcgga + 5281 tgtctgatga gggcataata cgtctttata gtgatcagcg tggcgaactt ctacgataat + 5341 tcgcaacact cataaggtaa acatttgaaa cttgaggctc ccttttttct ccccatagat + 5401 aaacctgttg tgacttacaa ctccgcgaaa tcggtacaat ctcagcgcgc agatcaaaat + 5461 ctctcgccta ttgccgtcgt cttgcagaag tggtctcagc aagacagtaa cgtctagatt + 5521 acacgcccag ggccgttgta tacggctcca gttcctcaag tgtgataaac cgagtccaga + 5581 aaactacaca gctttaacaa ccaacggcta ccaatgacgt cgtatgggtt cccaatagaa + 5641 caccagcaat atcaaagcta acaacaacaa cagcaactgc aaggctagcg tgacaagggc + 5701 ttaacgtagc ttggtaagcc tattccgcac aatacacccc cttcctgtgg ttttgggcca + 5761 ctacaaggat gaccagcacc tcgtcaacat agacaccatt tctaatgaaa cgtaagcggt + 5821 tctgacacga ctggtgtttt gaggctacgg tttgcattgt ttcaggacaa gaaatatcag + 5881 ttgtcaggag gaggatgatt gaagttcctc tcggagcact tttggctctt agtgatccat + 5941 acaccttctc ttcacaaggt aaaatgaccg gtatatcaaa gattgtgaag aagcgaaaca + 6001 aacaaggagt tgaggttctt cgtttccgcg gatgcccagc gtctaaagtg aggggcacaa + 6061 ggggtgccca aggactgcat cagtgtatgg aaaggaacaa ttccatgacc agtggagaag + 6121 catccgtaac aatttttgct gctacgaagc ttcctgatat accaagcata ccgtatactt + 6181 tacagaagca gctggatgag ctccgctctc agacaaccac atcagaccgc aggaagatca + 6241 aacgccttcc ccagctgcaa gtgtcggtga acagagatga tacggttatt aaaagggcca + 6301 ccaaaaccaa actaaatggg tttatggctt tccgggcatt tcattctcgt gaaatttcta + 6361 ctattgaaca ccaaaggggt atttcgatgt cactggcgac tgtgtgggcg agcgatcctc + 6421 cctcgcaact tgtctggcaa agattcgcag cagaatataa ccaaacagta cggtatgagc + 6481 ccgatttgtc atttgttgac tggcttcttt caatgtcgaa gggggttgac tcgaaaattg + 6541 atgaaccaac aaagagaacc ttaagtaggg cagccagggt ggagaacatt tatgttgaga + 6601 aggacggaaa tctaagacac aacacagatc catatgctct tgaactccaa aataaggacg + 6661 ttaacaaccg ttatcataac tacttgaagg aaagattgca gtcggcaata gatcgtccaa + 6721 ttgtcacact cgctagtgac ccatcgttat ccaggtcata tatagatcca ctagtctatg + 6781 agatcagtag tggcacttac gaaaaatcct aaccttcccc agatttgttt aggtttgatg + 6841 tacgaacaat aactataata aacggtcgca ttgcaatgtg ttcaatttct tctaccacct + 6901 cttgtcatct gtggcaactt gaatggcacc ttgagagagg caaccttgta agtcgaagcg + 6961 agattcttct taataccgaa cgcctcagcc tcagcaacag ttgcgctctt gacaatagca + 7021 ccaagcgcct tgaaaagacc aataagcctt gtcggtttca gagaaagttc ttgggccaat + 7081 gggacaactt caacatggaa gccggagatg tgcatgatgg tggcaagaag gaaacagaga + 7141 agcttatcct cgtgatgtgg atcaatcttg aagcctctgt ccttggaacg accgaactgg + 7201 ccaggtcttt gaatagcgaa gcggtcaata ataccatcga taagaacctc tggtggagag + 7261 ttgagctggg ttgtgagtgc aagcttgttt gagatacgtc tgttatggta gacacccatg + 7321 aggagagagg cataatagat gagctgtagt ttggatgtct gggagtcgtc ggtgattcct + 7381 gcgagctgtt tcttgataaa ttctgattcc tggtatggca tgtactccaa tctcttttca + 7441 aggtccttct ctttgatgat tggacctgcg cggatgaatt gttgttcctt ctttggaatg + 7501 atgttatcga taggatagat gtcttcaacc gatgtagcac taacatcggc aacgggcgtt + 7561 ggtctgtcgt cgagtacagt cttctcgagc tcttgtcttg taggaagcga tgttgtgtgt + 7621 cccttgactg tgtcaatgat gtcggcctca gcactcacga gcttctcggc atcaattcta + 7681 tttctctcaa gatctgtgat ggccttcttg gctttctttg taccaaaggc ctcaccaaga + 7741 gcagttcttt gaatgttggc acggacgttg ttctgtttga ccttaggtcc tctaagtctt + 7801 ttgtgggcct tagatgtgac gtttccgaga aggacaggag ccttgtagag ctcgacggac + 7861 ttgttcaccg gatcgtagag ggcaatggcg tagtcgcttg ggtcatcatt gtttgtgatc + 7921 gaatcatact cgagtctatc attctctccg tggaatatca cttcatcatt cttatttttg + 7981 taaagatcga agtgtgcatc ctcaggaact gagaaaccct tgaagaaaga tgtgacagcc + 8041 agcgtaggat cggtcgtgac gctggaaaca cgaagctcag gttgctcgtc tcttgatctc + 8101 ttctctccca tgacggctct ctataagaag gaggtaacag ggggtacgtt gggtgttcga + 8161 gggccagaag gtgtcactca gagagagacc gcatcgcacc gctaaaaaaa atttgtgtcg + 8221 cgagaagagc tggtggtcgg aaatcatata caagcacgtg ccatacagct ttctgtactt + 8281 gaaacttgat tgatgccccc ggaaatcatg actgagggtg gtctgcacta cgcaccaaga + 8341 taatgctggt gtcaccctct catctatctc gaagtgttgc taatctcgaa ccattcacaa + 8401 acctagaaca tactacatga acagcataac tcaaaagtcg cattacgagc ttctcggagt + 8461 ggagccaaca gcaagcagct tggagataaa ggccgcatat agagagaaac tattatcaac + 8521 tcacccagac aaaacgaaag aggttgtgag tacagatatc attaatcaga tcaagcaagc + 8581 ctacatcaca ctttcggaca gcaatctgag gtctgaatat gatgccgatt tacaagagtc + 8641 atttaagaag agtggactca tcagcagtgg tgatggtctt gacatattct cgctagatga + 8701 cttcaagtgt gagatgattg ggatcggtga ggacgagatg gctgtgttca aaaaggattg + 8761 tcccagatgc acaactcaag atgggttcga gctgaacgaa gccgatttgg aacaaagtgg + 8821 gacccgagat ggtgctggag gctacgagat cattgttcag tgtgctgcct gcagtttatg + 8881 gctcaaagtc aaatactacg accttgacga tgaagacgac gacaaagatg aggaatgaga + 8941 cggtcattgg gctgtccgaa agataatttg gttctagagg tatctgtgaa tatggccttg + 9001 atcaacataa accgccaaat actcagctag tgtctaacca aaccgaagaa ttgagaccgt + 9061 atatcttcaa gactctacaa gaaataacaa ttggagatac tccacggcta caaatgagct + 9121 aagtatcaag aagtgaatga attgctttca aaccagctat cctagctaat caccttatcc + 9181 atctctagca gatagtcttg ctttctcttc ctgtagcact gcaaatagag cgtcacccat + 9241 agtttcaagg tcagtcataa gtgaaatgtg gccttcacca cttgaaagtt tggccgcaac + 9301 agggaatcct cttctctctg gcatcaacca cttatgatga acaacaccat caccaggacc + 9361 atagaagaag tcatcgtagt taccattctt gatatcagcg acaccatcaa cacgggcacc + 9421 tctcacagtt ggaacctgat caccataaac gattgcaagt ggcgggtatt tcttctctgg + 9481 gtcgtactta aggtcatcga ggaacttttt ggttcttttt aatgtgcgcg agaggtatgc + 9541 gtatgattcg tcaaatgaga cgttaaattc ttctgctgtc gacttgtgag aggacctcaa + 9601 agagagagaa cgtttcatgt caaaagagtc gatgcctttc aaaattggtg acttgacagg + 9661 ttccaatttt gcagctttgg cactggcttt ctggcggctc ttagccactg ctggtgacaa + 9721 gttatactcc acccaagtct gcggatcaaa atagtcaagg ttgtactgtt catgggtttt + 9781 cttgtcgatg aagcagcggc catcctcagg taggaagaca aaactggatc tcataaagaa + 9841 gttgatctca ggtgttagga tcttgttgtt gaaaagcacg gtatcaccat agcggattgg + 9901 accgagcacg tttggacaca ttgatggaac acccacgtag atcaagccac ggaacagatc + 9961 cggtctctgc tgcatggcat ggtgggcaac caagcccccc attgagtgag cgatgacaat + 10021 agcaccttta ggattcgatc cttggttgca ttttaacttg gccaagaatt cgatcacctt + 10081 ctgtgaactt atatcgcagg acagtctcca gtcatatcca aaagtatgca cattggtctt + 10141 accatttgtc agcttcgccc tcagtttcct tgtgatatcg actggtccaa catgatttag + 10201 tgtctttgga gaatatatgt gcttctggac ttcgatttcg tcctcatcat ttgggcctat + 10261 cagcaatgtc ttcttgttca aattgagccc tgtcttgaaa gagggaatcc agagacggtt + 10321 gttggtctcc gtctccttga ggacactccc tctgtagcct cccagaatta ccacctcacc + 10381 ttcaatctgg tcccacacgg attccttctt cctcttttcg tcgataagtg aagggatgct + 10441 aatggcaggc gtgaatgctt tcttcactgc tctgaaccta ccgttgtcaa cacccttgag + 10501 gtccttgaaa agaaaacttt cttcgatcgt gcttaccgac tgctgcctct tgagtttctg + 10561 tttgatctca tgccttgaaa gagtagggtc ataccctcga tcatctgtat cgttgctgcc + 10621 aatgatagga aggttctgtc taatctgctt tattgatggg aagtgtatcg catttccacc + 10681 aaacggaaga ctgaatgtga aaatcttgtg ctcgttcttg taatgactac tctcaaggtc + 10741 atcagtggta acctggttgt tttccagctg ctcgtccttg gatgaagtct cctggtggtg + 10801 atgttcagga tgtgccgaaa ctacacttga gccaccgatg aaggactgcg cagcatccga + 10861 gctgacgtcc gagccatccg cgtgctgtcc tgggaagtac tcggtgtctt cagtggcctc + 10921 tgaagattgg agattgtctg acatggtgga tcttgccttc ttcatccaaa gtcgcctggg + 10981 gaagacgcag attactcaaa tggcggagga aagttttagt agctcggatc tcacggatta + 11041 ccgctccggc cgaggcgacc cgcagcaatg gagatcaaca gatgcagtca ttagacacac + 11101 aggcttccag tcgaggctac gcgagcattg gtggtcctga cgagaaacag aaagggatag + 11161 gctgtgctgt atgctgtaaa tagatggttc cctcgcctca tcaatgtgcc aaggattgac + 11221 aaaactgtgc acccggtaac ttatcatctg ccttcgaggt ggcccgcgca cgcaaccctt + 11281 cctcttcggg acacccctac accacctcga atttttcaca acgtcgattt tggtgagaaa + 11341 gatggggatg aatcgatgtg ttgttccaca gagtgacttt cgttccttct gtaccctatc + 11401 gcaatgatgc agaatggtct tcagcgtatg ttataatgtc ttgccctttt ccttgttggc + 11461 gggagccttt aactaacaag aaatgcagcc atcagaagat gtttagcgac agcggcatca + 11521 tcatcatcac cagcttcagt gtcacttgag agcatcaagg ccggtcttct gctcgctcgt + 11581 aacccaatcg tcaccccaga tctcacacct ctcgaaaatg catacttcaa ctaccaggag + 11641 gaactcgaac gcagactgat gtggacattc ccacactact actacttcaa gaagggttcc + 11701 ctcgccgaac gtcgtttctt caaggcacag cgtggacctg tatctaagca gccaggtgtc + 11761 ttctactcga aaggtgtgcc tgatatcgtg cacaaccgtg aacgtcgctc gaagcaggag + 11821 gttgtgattc caaaggatga atacgaagaa tccgcaatgt cggacatttc gagaccagtt + 11881 ttaccaaact ctcgtgttac aaaagcagac gaacagggtg atttgacaag tttggaaaga + 11941 cagctaccga gaacacttta tcttcttgta aaggatggaa agcttggctg gaaactgcca + 12001 agtttcgacg ttacagaggg tacaccattg cacagagtcg ctgaggacgg tttaagacaa + 12061 cttggtggtg accagattaa cacatggact gtcgctcgtt ctccaacggc agtcttaaag + 12121 tttgatggct gctctttggc tccagtggat gctcagaaga agggtctctc cagagaattc + 12181 atcattaagt ccaatatcct ctcaggtgca ttcaagccac agaaggttga gtatgcttgg + 12241 ttgactcgtg aggagattga agagaaggtg agtggggaat acttccaggc aactgagttt + 12301 ttgttctctc gtgtctgaat ttctgcaaaa gaggatgttt gagggcttgc tacatgtata + 12361 taaacctagc atactacgtt gttaatgaca ttcaacattc atacagatca tcactagagc + 12421 ctgatggtgc tgtttgtaat agccgacgaa caatctctag atcaattggt acgttcaaca + 12481 ccagtgaaaa cagacccatc accatttgtg taaagatatg agattgccac tgggctgaat + 12541 ctgaactttc catcgagatt agttccagaa ttacatcctg ggagcgacac gacctcttta + 12601 ccggtctcta tgttgaagat cttcgcagag tctgcctctt gataagtcac accaaggtgg + 12661 acgccatcag caaagagatc cattctatga attgactgat caacagttcc aatggttcgg + 12721 gccaatgtta ggtctgtggt ggaccagagt gagatgatac cctcgtgaga accagcagcg + 12781 atgtagcgac cccgtgggtc catacacagg gaattgatcc tagaacggtg accctcaagt + 12841 atgcaagcat tgacaaaggc accatcaccg cccttgataa caacagagat cttaccagtc + 12901 acaagaccga caaatatggc cacggagttg ttgctccaac aaagcgacga tacgccatcc + 12961 tttccatact ctaaggtctg caactgttcg tatgtgttag cattatagat cacaagtgtg + 13021 tgtgcttgtg tgatgacagc caagtattct gcattcggag agtatgcaat atcaactggt + 13081 gttgtctctg cggtctcaat ctcatgcatt agcttaccag tcacaatgtt ccaaatatga + 13141 atgctcttgt cctttccaat tgtggctaaa atctcatcgc tttctggtct ccatgcaatt + 13201 cgtgttacca taccttcatg taatttcttc ataacggttg gctgtcttgg tgttggatca + 13261 ccattgttct tgttcacgtt ccatataacg agtataccat ctgtacgtga cacagcaata + 13321 cgtgcaccgt tgtaactcca ttcagcagca gttatttcga agccacggtg agtttcacga + 13381 tttggtttga caagctctat atgattcatc ttttccaacg gctgttggct tggtcccgat + 13441 ggaagcaccg tcttcgattt cttgctagta gagggccttg attggcgtgt agttggggct + 13501 gtatctcgag gcaggtcgtc tcttctcgat gtgtgacgac tagcatcagc acgatcactt + 13561 acacggttac ggtccgaagc tttatctcct ccgcggattg ctccacggtc attcggtcta + 13621 ccagtgtctc tcgtgccatg gccgtctcta tcacgatcat cccttgaggg tctgtctctg + 13681 tctctttctc tttcccggtc ccggagatcc ctgtttctgt cacctctatc acctctgtta + 13741 cctcttccat cccctctacc acttcctcga gcgtcacctc tttcatgacc tcgatcacca + 13801 cgaacacctc ggccaagtct gtcatcagca cccctatcag atcttcttag agtggacatt + 13861 gtctcaacac tctctgctcc gcttctgctt aactatccag gaactgatgt tgtacaattc + 13921 tgagttccca gtgtttcgag gtagtgaatg ttatcggaaa aaaacagaag gcgcgcatca + 13981 agaagtcagc tgcgggttac taaatcgcat cactaccaag agaagatcac cttctaacag + 14041 atccttcttt gactcttcca acaatgaatt cccaacggca tacaccctat attcgagctg + 14101 actcctccag tgtgctaccg aggacgctgg gccgtcgacc gcccggccct gtcatcccga + 14161 acctgggagc taagcaccat cacagctctc tcaacaaacc ccctcgatca tctcgacagc + 14221 atgatgaacg agagtcttca tcacctccca gaccacacag ctcctttgcc ccacccatca + 14281 actccaattc ctcaatcacg tccgcctcta gtcccaaaaa aaacgttacc gatgggcggg + 14341 accccgccaa cttgatctcc acaacgtatg cctactgcgg caacaggaaa cgactgcaga + 14401 atccaaggga agtcgaaaat aaaaagagac taagagagat ggaagcaaaa aatgctcctg + 14461 gggaaccgcc ggtgcctcta cagtctaaaa ggtttcaaca ggaagcgtca gttgtcaagg + 14521 cgaatgatgg ggacaccttt gagcctctaa cgtcttcgtc tggtgtgcta tcacaagaga + 14581 caaacaaccg aaaaagaaac atactttctt ctttggagaa acgtgcccca ataatgtctt + 14641 caggtgaaga ggaacaagaa ggttcaaggc atagaattcc ttcaattcaa tcagacgctg + 14701 acttcatgaa ctccattcgt gctccaagga ttcccagtcg agctgctcaa actgactacg + 14761 agaagcacgc tgctagcgct cgtctacaac ataaacgtga ggatacagag gtcaaggaaa + 14821 tggatcaaca attgcatgat gacacgaatt cagggaaaag ggaaactaaa aaaggggaag + 14881 atgtcgctcc aataccaagg aagagggcgc tgattaaagg tgtgaaatct tctgctaaga + 14941 aaagcacagg atcgacgagt caaccattgg gtgatattag gggcatgctg tctggaaaga + 15001 aaaagtcagg gagtaagtca cctcaccgcc gtggcaccga agacttgggt actgaagatc + 15061 caggtggtga gacacacaag caccgggacc gtcatgaagg ttcagtgggg gacgctctag + 15121 gctcggatga agagttgttc aacttcgact cgcctgggcc atcctcgcaa gaattgcgtt + 15181 ccgccaaaga gcttctcaag gatgatgaaa gtcataaagc tatgaagtct gcaattgaca + 15241 gtctctcaat aaaaagcggc atattgaaca aacgattcaa acccgatggt gatgactatc + 15301 ttgagatgat gaagcgcagg tctgtctttg acccaaagca gtctcgaaac attgagtacg + 15361 ctgacttgaa tcaggatatc agtgttggtc tacaaaatga gtttgaagag gttgacgagc + 15421 aggcaaacga ggtcaaacag caagctattg tgaaaaggaa gtatggaaat gaggagttcc + 15481 cgggaacatt aagcctcggt gagattgagc aaaaggccaa ccagcacatg gactgcattc + 15541 caaaaattct caacggtcgt cttgactcca cttacctaca aaaagcgaaa gtattcatgc + 15601 acgactctgg agcaacaatc ttgtccaatg cagatctcca aagacctagt ttcaagcagt + 15661 tctttagtgg attttatggt ttgaagaggc aaggggctat tgccaatctg atcagaagaa + 15721 agtaccataa acttatcaag gagaaggccg agcacaacag ggttatccaa ttttggtcca + 15781 tcgatacatt cacattacac attctcgctc cagaggttgc tgcaagaatg gccgccgagg + 15841 atatgagtat cagcatcgat gaggctatca gagtgttgga tagaacagtt gattatggtc + 15901 aatacatcgc tgatttggtc ccttgtgaat gaaatgacag cctgcacttt caaaggtgca + 15961 tttatataga aattctctca acaaaggaag gatctattct taaaaccaaa acgataacgt + 16021 tactagacat atttgggcca aaatcagaca ccttcctctt tgggaagttt ccccgtcacg + 16081 atttcgcgga cagcgcggcg cgggcgcagt ctgccgcgat cggattggtt atggaattga + 16141 caacaggata ccaagcatag gctgtcacca ccaatatcag tacagaaggt cacctatcgt + 16201 tgatcaatcg tgagttccct tcacactctt tctgagctgg gcatgctgct attggccctg + 16261 tctcttttcc ggaagttaca gccggaattg attgaagatt cagacagccg ccggccgata + 16321 acaacgacac cttactcaat gcatacccga tcttatctat acttcagatg actaacaata + 16381 cttgaaaaga tgtcgaagac aatctccgac tctgacctta tttcatcgtt gaagaaggct + 16441 acttctctcg acgaaactgc tccaaagaga aaacacgtca gagcatgtat tgtctacacc + 16501 tgggaccaca agtcctccag acagttcttc aaccagctga aactgctccc tgttcagggt + 16561 gatgaagttc aactctttaa gacactgatc accattcaca aggttctcca ggagggtcat + 16621 ggctctgctt tgaaggaggc catgcgtaat gctgattgga tcgagggcct aggaagatca + 16681 gtccatggtg atggattcaa gggctacgga agactcatca aggaatacgt ggtctatttg + 16741 ttaagaaagc tcaactttca taagaaccac cgtggattca atggtacatt cgagtatgaa + 16801 gagtatgtct cccttgttac cgtgcaaaac cctgacgaag gttacgaggc cattctcgat + 16861 ctcatgactt tgcaagatgc tctggacgat cttcaaagac tgatctttgc tagtatctcc + 16921 catgacagaa agtctgagtg taagatctct gctcttgtgc cattggttgc tgagtcatac + 16981 ggtatctaca agttcattac gtctatgctc agggctattc accgctccac gggatctgat + 17041 gaggcattgg aacctttaag agaacgctat gagtctcaac atgccagact ctacgagttc + 17101 tatgctgact gctcctcaat ccgctacttg acttccttga ttacaatccc aagacttcca + 17161 gaaacagcac caaacctcat ctccaaagat gagagtgacg tggaaagtga aagaccggcc + 17221 tcaagacaaa cttcggtcgc tacaccagtt ccagaaccaa tctcggaaca gccaactatg + 17281 ggtaacttcc aacagccaat tgcatctcag ccaactggtg ttgatttctg gaacacccaa + 17341 caaaacgtgt ttgaagccga acagcagaga cttgcaagag aagcccaaga aaacatgctt + 17401 caacagcagc aacaggctga gcaacagcgt atttggtttg aacagcaaca ggctgctcag + 17461 gctgaacagc agaggctagc ccaggaacag cttttgcgcg atcagttgca gaaccaggca + 17521 gagggaagag tcgcagagct agaacgtgat ttgctcgcaa tgaggcaaca gtacgagaac + 17581 gatcagttgt tattacagca gtacgatcaa agagtcaaga ccctggagca ggaaattgcc + 17641 accacaacac agactgctac tcagcaactt ggttctaagg atgagctttt gaacagtttg + 17701 caggaacagt tgactttatg gaaaaataag tacgattctt tggctaagct gtactcacag + 17761 ttgagacagg agcatttgaa cctgttgaac aagtttaaga agttacagca aaaggctgcc + 17821 tcggcccagg aagccatcga gcgtcgtgag aagcttgaaa aggacttgaa gtctaagaac + 17881 gttgagctgg caggtctgat cagagaacgt gacagagcta gattggactt agagaaaatt + 17941 aagggtggta aagacagcga gattgataag ttggagctcc agatcaggga cttgacattg + 18001 aagcttgatg actctgagag aagccagtcc tcgaacttat cgtcggtgtt tgcttctcac + 18061 aagagagaga tggaagactt gaaggcaaaa cttgagacac agtctcgtgc tctgaaccca + 18121 gaccttgaac agaagctcaa agagaaggaa gaggagcttg agattgtgca gcaaaccatg + 18181 gatgatgccc ttcaggagct tgccagagtc cagggagaga acgatgaggc tattaacgaa + 18241 caacttgatg cagtcctgat tgatcacctc actaagctca catcattggt tgatgccatc + 18301 ttggcttccg gtatcaaaag gattcaggac tccttgtacg agctggactc tccaatgcag + 18361 gctggtaatc aaaactcatc accggagtac ttgctttcca tcatcgagaa ggcccaatcg + 18421 tccgctaccg actttgccaa ctctttcaat gacttcattg ccgatggtcc aaatggtgat + 18481 cactctgaga tcatcagatc cattaacgaa ttcacatctt ctatcgccga tgttctgctc + 18541 aatgccaagg gtattgtgag acttgtgaag actgatagtg aatctaatca gctcattgcc + 18601 gcctccagat ctaccgctca ggaatctgag gacttcctta tgtctctcct ctccgatatc + 18661 cttgaaggaa ctgaggaaga gaaaaccgaa gttgttattt ccggtaactt gaacgtccaa + 18721 gagaagcttc aagaactcat tgttattgct gagaaccttg caccaagatc tgttctcaag + 18781 aacattaatg gtgatcttgg tgatgctgtt gataacgaat tgaactctgc cgcttctgct + 18841 atcacatctg ctgctgctca tctcaaggat ctgcttaact cctctttcga ttcatccatc + 18901 gacggtgata tcaacaaggc catcttatct gctgctattt ccgttaccaa ctcaatcgct + 18961 cttttgattc aggccgccat tgagacacag aatgagattg tgacgaaaaa tcagggaagt + 19021 ggtacccgtg cccagttcta caagaaacac aatagatgga ctgagggtct catttcagct + 19081 gctaaggctg ttgctgcctc caccaagatc ttgattggta ctgcggatgg tgtgttgagt + 19141 tctaagaaca cccatgaaga attgattgtg gcttccaatg aagtggctgc ttccactgcc + 19201 caacttgttg ctgcctcaag agttaaggct acattcatgt ccaagacgca ggatacgttg + 19261 gagaatgctt ccaagactgt tacttctgcc tgcagatctt tggtcaacca agttcaggat + 19321 attctgaacc agagaacgaa tggtggtgat caggatattg acttctcgaa gttgacgaac + 19381 catgagaaca agactatgga gatggagcag caagtggaga ttttgaagtt ggagaatgcc + 19441 ttggcttccg ctagaaagag attgggtgag attagaaagt atggatacag agatggtgac + 19501 agtgatgaag agtaa +// diff --git a/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/locus.gff3 b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/locus.gff3 new file mode 100644 index 00000000..2b733c07 --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/locus.gff3 @@ -0,0 +1,5 @@ +##gff-version 3 +##sequence-region CM115473.1 631646 651160 +CM115473.1 MATPredict gene 631646 632572 . - . ID=36022_tbrc-4498_MATpf_MATalpha.gene0;Name=dic1;role=flanking_conserved +CM115473.1 MATPredict gene 637540 638457 . + . ID=36022_tbrc-4498_MATpf_MATalpha.gene1;Name=MATalpha1;role=core_MAT +CM115473.1 MATPredict gene 648035 651160 . + . ID=36022_tbrc-4498_MATpf_MATalpha.gene2;Name=sla2;role=flanking_conserved diff --git a/db/candidates/Ascomycota/36022_tbrc-4498_MATpf_MATalpha/metadata.yaml b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/metadata.yaml similarity index 99% rename from db/candidates/Ascomycota/36022_tbrc-4498_MATpf_MATalpha/metadata.yaml rename to db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/metadata.yaml index ca9014e5..a02e5373 100644 --- a/db/candidates/Ascomycota/36022_tbrc-4498_MATpf_MATalpha/metadata.yaml +++ b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/metadata.yaml @@ -137,7 +137,7 @@ evidence: MATalpha1 (alpha box), at the same DIC1-SLA2 position in different strains' citations: *id001 validation: - status: needs_review + status: accepted rejection_reason: null accession_resolved: false accession_resolved_date: null diff --git a/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/proteins.faa b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/proteins.faa new file mode 100644 index 00000000..3783a69b --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36022_tbrc-4498_MATpf_MATalpha/proteins.faa @@ -0,0 +1,6 @@ +>36022_tbrc-4498_MATpf_MATalpha|gene_index=0|name=dic1|role=flanking_conserved +MSSIASKTESTFSSSPSSTTSHKVDVTPRQKWPFWYGGFGGGVACLFTHPLDLAKVRLQTAPIPKPTLFQMAKSILVHDGLLGVYSGLSAGLLRQATYSLTRFGVYEYLKENVVPADKQSSMAYLLPVSMLSGGIGGVVGNPADIVNIRMQNDTGLAPDQRRNYKHAIDGVIRVAREEGTSALFRGLGTNLVRGVLMTSSQVVTYDVAKDWLISFGMNKDSISTFFSASLLSGLVATTICSPADVLKTRIMNSSGTGESVVHILTTAFKNEGPSFMFRGWVPSFVRLGPNTIITFLVVEQLKHLRVGM +>36022_tbrc-4498_MATpf_MATalpha|gene_index=1|name=MATalpha1|role=core_MAT +MIEVPLGALLALSDPYTFSSQGKMTGISKIVKKRNKQGVEVLRFRGCPASKVRGTRGAQGLHQCMERNNSMTSGEASVTIFAATKLPDIPSIPYTLQKQLDELRSQTTTSDRRKIKRLPQLQVSVNRDDTVIKRATKTKLNGFMAFRAFHSREISTIEHQRGISMSLATVWASDPPSQLVWQRFAAEYNQTVRYEPDLSFVDWLLSMSKGVDSKIDEPTKRTLSRAARVENIYVEKDGNLRHNTDPYALELQNKDVNNRYHNYLKERLQSAIDRPIVTLASDPSLSRSYIDPLVYEISSGTYEKS +>36022_tbrc-4498_MATpf_MATalpha|gene_index=2|name=sla2|role=flanking_conserved +MSKTISDSDLISSLKKATSLDETAPKRKHVRACIVYTWDHKSSRQFFNQLKLLPVQGDEVQLFKTLITIHKVLQEGHGSALKEAMRNADWIEGLGRSVHGDGFKGYGRLIKEYVVYLLRKLNFHKNHRGFNGTFEYEEYVSLVTVQNPDEGYEAILDLMTLQDALDDLQRLIFASISHDRKSECKISALVPLVAESYGIYKFITSMLRAIHRSTGSDEALEPLRERYESQHARLYEFYADCSSIRYLTSLITIPRLPETAPNLISKDESDVESERPASRQTSVATPVPEPISEQPTMGNFQQPIASQPTGVDFWNTQQNVFEAEQQRLAREAQENMLQQQQQAEQQRIWFEQQQAAQAEQQRLAQEQLLRDQLQNQAEGRVAELERDLLAMRQQYENDQLLLQQYDQRVKTLEQEIATTTQTATQQLGSKDELLNSLQEQLTLWKNKYDSLAKLYSQLRQEHLNLLNKFKKLQQKAASAQEAIERREKLEKDLKSKNVELAGLIRERDRARLDLEKIKGGKDSEIDKLELQIRDLTLKLDDSERSQSSNLSSVFASHKREMEDLKAKLETQSRALNPDLEQKLKEKEEELEIVQQTMDDALQELARVQGENDEAINEQLDAVLIDHLTKLTSLVDAILASGIKRIQDSLYELDSPMQAGNQNSSPEYLLSIIEKAQSSATDFANSFNDFIADGPNGDHSEIIRSINEFTSSIADVLLNAKGIVRLVKTDSESNQLIAASRSTAQESEDFLMSLLSDILEGTEEEKTEVVISGNLNVQEKLQELIVIAENLAPRSVLKNINGDLGDAVDNELNSAASAITSAAAHLKDLLNSSFDSSIDGDINKAILSAAISVTNSIALLIQAAIETQNEIVTKNQGSGTRAQFYKKHNRWTEGLISAAKAVAASTKILIGTADGVLSSKNTHEELIVASNEVAASTAQLVAASRVKATFMSKTQDTLENASKTVTSACRSLVNQVQDILNQRTNGGDQDIDFSKLTNHENKTMEMEQQVEILKLENALASARKRLGEIRKYGYRDGDSDEE diff --git a/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/locus.gbk b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/locus.gbk new file mode 100644 index 00000000..f917bd90 --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/locus.gbk @@ -0,0 +1,518 @@ +LOCUS JAMAIE010000005. 25634 bp DNA UNK 01-JAN-1980 +DEFINITION 36038_pb4207_MATbz_MATa-MATalpha core locus segment 0 + (JAMAIE010000005.1). +ACCESSION 36038_pb4207_MATbz_MATa-MATalpha.segment0 +VERSION 36038_pb4207_MATbz_MATa-MATalpha.segment0 +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers + gene complement(1..951) + /gene="dic1" + /role="flanking_conserved" + CDS complement(1..951) + /gene="dic1" + /role="flanking_conserved" + /translation="MSSVTATTHSTATGAPIALQPAASANAKTITATKTPTTKWPFWYG + GFGGAVACFCTHPLDLAKVRLQTAPLPKPSLFQMAFSILKADGITGIYSGLSAGLLRQA + TYSLTRFGAYEYLKESFVPADKMSSMAYLLPISMVSGAVGGIVGNPSDIVNIRMQNDTG + LPIEQRRNYKNAFDGVARIVTEEGPSALFRGLSTNLVRGVLMTSSQVVTYDLAKEMLIS + FGMKKESFFTFFSSSLLAGLAATTICSPADVLKTRIMNASGTNHSVVHILTKALKDEGP + SFMFRGWVPSFVRLGPNTIIIFLVVEELKRMRIGL" + gene complement(8353..9218) + /gene="MATa2" + /role="core_MAT" + CDS complement(join(8353..8874,8931..9218)) + /gene="MATa2" + /role="core_MAT" + /translation="MESLKIAHFKASAGNDSDLRIKKSILPFVSIPKGPSSGQKFTLTF + EDSPSTSSKQYSNVARPRNQFIVARMILNKIVLANCNDTIANDDVSKIISIIWKTSSSP + FQKYFKYLSLLEESWHEEHYPLYHYQPKVRSKTIKSLAPVLEQSRTMTGRISKCAPLSS + LKKKSGFVNTSPHMMGTYVKLSTSSFRHSTVVSNVSINLVSKFRLTKGHTSGTTYKKRG + PRSSKDDAYIKNNLWCLSGFDKTNYFEPLFYEDKIQNITLEDFKDYI" + gene 9843..10331 + /gene="MATa1" + /role="core_MAT" + CDS 9843..10331 + /gene="MATa1" + /role="core_MAT" + /translation="MNQKLITGQYQRLLFNTLADKYGSEVLELIDYSVEKPYFLSKSYR + VKSSTISVNERSATESNCSDISPSSHSPPEASSMNTSNVCSVSEAVMASPDSNNNIQQK + KRRRHISKEARSLLEKAFETTKNPTRKERAIIAEKSGMTALQVRVWFTNKRMRTKTRI" + gene 13165..13866 + /gene="MATalpha1" + /role="core_MAT" + CDS 13165..13866 + /gene="MATalpha1" + /role="core_MAT" + /translation="MPRKEVKAKWTSNPKKPYSAGFKLFSLPGLKHRNNALESKNPSKC + TSPSNFQCLTFAATSLPKIPKLSADYERFIEGLKDHKAGQDSSTYIRQHLRRKRGPSRK + RTKLNGFMAYRSFFSRNVATDQQGVLSSQLAKEWERNPEIQLVWKRYSTEYNLSVLSDR + LPFFDWLLLVTSEPTCISENIYDNKDPGTFSRIQDVFNTNEADENHQFLKMSFDVSVID + PRIGQAFEHSI" + /gene_class="alpha_box" + gene 14843..15184 + /gene="MATalpha2" + /role="core_MAT" + CDS 14843..15184 + /gene="MATalpha2" + /role="core_MAT" + /translation="HTKELDLLQKRHSNTTAEDQSQFQEIQKDLLKSQLLLSEKAILVE + ALERFSTSTESPNNPDPFRFNIITQKMIREDGSIISRKKRLARQKVAILEDWYVFSHST + LFKFTINIV" + gene complement(22494..25634) + /gene="sla2" + /role="flanking_conserved" + CDS complement(22494..25634) + /gene="sla2" + /role="flanking_conserved" + /translation="MSKTISESDLQTALRKATSADETAPKRKHVRACIVYTWDHKSSLS + FWNALKILPIQNDEVQLFKALITIHKVLQEGHQSALAEGYRNLNWIDGLGRSIQGDGFK + GYGRLIKEYVTYLIRKLQFHRNHRGFNGTFEYEEYISLVTVQNPDEGYEAIMDLMSLQD + SLDDLQRLIFATISHDKRSECKISALVPLVTESYGIYKFITSMLRAIYRSTGSDDALEP + LKQRYESQHARLFEFYADCSSIRYLTSLITIPRLPETAPNLMVKDESSVEEETPRPESR + QTNLSEPISEQPTVSQFQQPIAAQPTGVDFWSNQQSSFEAEQIRLQQERDAQALQQQQY + AEQQRILFEQQQVQQQEQQRIAQEQLLREQYQSQAQGRVAELERDLLALRGQYEQDQLL + LQQYDQRVKALETEITATTQSATQQIGSKDELIQNLHEQITLWKNKYESLAKLYSQLRQ + EHLNLLNKFKKLQQKAASAQEAIDKREKLEKDLKSKNVELAGLIRERDRARLDLEKVKG + GKGDEIDKLELQIRDLTLKLDDAERNQSSNLSTIFAQHKKEIEALENQLRQQSSAFNPE + LEQLLKDKDEELEILQQTMDDALVELAKAQKENETAIEEQIDQVLVDHLTKLTSLVDAI + LLSGLKRLQDALYELDSPMQAGNQNSSPEYLLSIIEKASSSAMDFGDSFNDFIIDGPNG + DHAEIIRSLNDFTSSIADVLLNSKGIVRLVKSDAEADQFIATARATAEESEEFFKSLLS + DSLEGEVEEKTDVVMAGNLAVQEKLQDLTQLTEDLAPRSNLLNSNVANLGDLVETELQN + AAASISKASSQLTSLLSKDQDPSISQIDFEINKAIVSAAIAVTNSIELLIKAAIASQEE + IVAKNKGSISKTEYYKKHNRWTEGLISAAKSVALSTKILIETADGVLSGNKSHEQLIVA + SHEVAASTVQLVAASRVKATFLSKTQDNLETASKNVTSACRSLVNQVQDILTQRSNGGS + GENDVDYSKLTNHENKTVEMEQQVEILKLENALIAARKRLGEIRKYGYRDGDSSEEE" + /gene_class="sla2_homolog" +ORIGIN + 1 tcataaacca attctcatac gcttcagctc ctctacaacg aggaaaatga tgatggtatt + 61 tggtccaagt ctcacaaaac ttggcaccca acctctaaac atgaagctgg gaccttcgtc + 121 cttcaaagct ttagtcaaaa tgtgcaccac ggaatggttt gttccggatg cattcatgat + 181 tcttgttttg agcacatcag caggtgagca aattgtagtt gcggccagtc cagcaagcag + 241 agaagaactg aaaaatgtga agaaggactc ctttttcatt ccgaaggaga tgagcatttc + 301 cttggccaaa tcgtaagtga caacttggga tgaagtcatg agaacacctc tcaccaagtt + 361 tgtagacaag cctctaaata gggcactagg accttcttca gtcacaattc gggccacacc + 421 atcaaacgca ttcttgtagt ttcttctttg ttcgatcggt aaaccagtgt cattctgcat + 481 tctgatattc acaatgtcag atggattacc aacgatccca ccaacagctc cactaaccat + 541 agagatgggc aatagataag ccattgaact catcttatcg gctggaacga aactctcttt + 601 caagtactca taggcgccga atctggtcag tgagtaggta gcttgtctca ataagcctgc + 661 agaaagacca gagtagatac ctgtaatccc atctgctttc aggatcgaga acgccatctg + 721 aaatagcgat ggcttgggta aaggagcggt ctgtagacgc accttagcca aatctagagg + 781 atgggtgcag aagcaggcta cagcacctcc gaaaccacca taccaaaagg gccacttggt + 841 ggttggggtc ttggtggccg ttatggtttt agcgttggcg gatgctgcag gttgcagtgc + 901 gattggagcc ccagtggcgg tgctatgggt agtagcagtg actgacgaca tggctgaccc + 961 gttgcgatcg agttgacttc ctggaactgg tgtggttggg tttcaattga gataggaatt + 1021 tttttttttt ttctctttgg tattttttct ttttattttt gagatccaat agtagtaaac + 1081 ccaagcgaca agcgaaatag tatatgtaaa aacaataaag agaactctta aagcactgca + 1141 gactatgtgt cttctatgtt aaaactataa caataaaact ataaatgcga tagacaggtt + 1201 ggtttcagaa taatcaggtt ttaggattct actggtcttc gactttgcac taatagcttc + 1261 aaatcttcaa aaactgttcg ttgttatcca aactctacct catcgatatc tcttagtcat + 1321 ttttctacta gagttcttta atgatgatct ttaataaagg gtcatatgga acagtccctg + 1381 tagattctct tcatgaattt cgtggggata tgctaataat tgcttatatg gcaattgcaa + 1441 agtctatact tttaaattct attaaatcag agtgtcgcat atgaactatg attgattttt + 1501 aaagccgacg gtatatccgt ttacatttga tgcgtgcgtg tgtacattgg gtagttaccc + 1561 ttataagctc aaaatttcca ggtagcttgg gctaaaaagc acttcttcta tagttataac + 1621 atttatactg ctagcactaa cttcttctaa tattattagg gatattagac atgtttgtaa + 1681 tactattgtt ggagctttgt aatggctgac aaaggcatta tggtaggctt aatttcaaca + 1741 taaaacgtgc atttatttag cctgcatggg aattaggaag taaaaaagat atggatctct + 1801 aagtgagttg atagtttctt atgcgttagg tgtatgagtg agctttatgc ctgggtctga + 1861 aattgccaaa ttgaaaccgt aatttgagta tctgaggcat catggttcgc accgttttgt + 1921 agtggggata agaaagatgg tccgggtaag ttcgatagtt agaaaagagg agggtgacga + 1981 ggagacgacc tgatatcaca atgtgcgctt tggaattgga gtagcccatg acgagggaga + 2041 atttatcctt ggtgaaaact taaaacgtct caactcccga taatcgatat tcttcgacac + 2101 ggagagttca ggtaaactac tctatgttgt tgaatcaagg atagttgact ttgctgaatt + 2161 tgtggaggga gatcttgata actccaaatc agtaggaatc aaagattaag aatcatagct + 2221 atagtataca gagtttcaga attcgagtaa gttcaacttg aatagacttt cagaaaccaa + 2281 ccagtgggta ggaaatctca aagtaaaaga taagccaaaa aaaaaaaagt acattttcaa + 2341 agtccaactg cggacaaatc cgggagggga aagaaggaac cccacttaac ggttctcttg + 2401 ataaagacaa atgtaagacg agtattaatg acgaaatcga tatttccact aaccaaaatc + 2461 gttttgacct agttacttta gacccaaatt aaaatttact tactcaaggc cacctgaatt + 2521 gcaaacctaa cgggtgggga ctttccaagc tcgccaaact cccaaacaag cgtcattgtg + 2581 tagtttatgg tcgatttatg tctactttca agcttcgtta tctcacgctg gactccttcg + 2641 aactttacta ttgctccgcg gtgacccaag gcattagagg attctatccc ctgcgtagtt + 2701 gtatgttaaa cactgcttcg ataatgtttg ggacattcca aaaaaggagc gttaccaaac + 2761 gcatcaataa ttggaataga ggagaaatca ctgtctgaag atttctcagt cacataggga + 2821 ggtgcgaaat ttgaagcgcc catactggta gtatcatgag acaacttacc atctgggacc + 2881 ctttcaatct tgtcaactaa tccaaaaaca tacttcttta gagtcgaagg atcgttgtat + 2941 gaccttctga tacgctctct ccatctatct gcatctgctt tcattgttaa agtgtaggag + 3001 aggctcatct tgccatggtc caaaccaggt atctcggtga tcatatcgga gactccaaat + 3061 tctgtctttt cagtgttcac atgagagagg gactctaata gcgtttggat aacttgttca + 3121 ataggttcca ggaacccctc cgggatttca tccaacctat tttgaagatc ctccaaactc + 3181 attctcgtgt tctccagctt gaagacagtt tcacgatagg caacatcttt aaccatcaga + 3241 tgcctatgat gacgaattct gacccatgcc cagcgataat ggaatagaat tgcactacaa + 3301 agcttagtct ttgaaaccag gtccaatgga atttccttca cctcaatcga aagagctgtc + 3361 aaaagctctt ttagaaaacg gacaagcgca aggttgtctt gctcaaactg acaagcaaac + 3421 gaatgctcac cgccgatctt aatagtgcca gacttgtagt tctttaaatc atagcggtct + 3481 ccgtatcctt tgtattcatg tggcttgatc tgaatgaaaa taaagctttt tcctgctaga + 3541 cggaattgaa gcagggctgc acgtgtaagt ggcttgggag cacagagaac agtcacaaca + 3601 ggagtgccag aaattgctcc ctgaaatttg gatatacctg acaactctct gacttcctta + 3661 ggggaaataa gcctcttgta attcttgcac tgaaccacaa atttcacacg atcatgattt + 3721 tcatggcaca gtggactcat gacacgggcc aattctcggg caaggactgg attggcttga + 3781 ggtttcgcaa aatcagacat attccaaaaa cctatcaggt cagcaccatt gtccctggtc + 3841 ccaccaacgt tcttcaattt gagatttagg gcatccatca aagtcattct cacagaaagt + 3901 tcatagaaag tacctcgaat atgcgcacta ttatccaaat ctttacctct ggccttcata + 3961 tcatcgagaa aagcctgtag agttatactc gttgacgtca ggctagacgt ggacatagtc + 4021 tgcttgatga ttgtggattt gaatcgggct atccatttgc aagtgcaatt catcattgat + 4081 tgaatgcact tggctctctg gattcttgta tgagccagca tagcctttta atgcaatgaa + 4141 ccactacagc agagacttag tgggacttgt tctcttttaa tatcagcatc gctccacaaa + 4201 acattgtttc attgtctcat atcgaattat caagttttgt gataatatat cgatattgtt + 4261 tcagtttgtt ttcatatcct ttttttgaaa taatagttta aggaggtagg tacattggac + 4321 aggtgctttt ttaaaggtac acgttttctc tttgaagatt ggtgattcaa aatgctccca + 4381 ctaaatttcg attaaagtaa ctaatcagtt ctggagcggt tgctcttact gtctcagctg + 4441 ttggctggga agagaagttt tatttttgtc agacaataca aacaagttaa caatgaaata + 4501 ggatactgca ttataatatg aaacagtgag aatacaactc acgtttggtg cgtgcctctt + 4561 gaaaacatct ttgagctaat atatagctgc tgtggcgagc tacaactacc agccgtccaa + 4621 cctgccaact gataggttcc aaggtagcaa ttaagatgta ataggtgcat atatttagct + 4681 gatgattgtg aataccacga tcacatacat acacccttct gggagattta aggtactttg + 4741 tctggctctg ccccataaat atacgttggt cgtagattgc tgctgattaa aatctatcac + 4801 gtgatcttta tcagtggcct ctgggcgcgt ttattcgtgg gataggcggg taactttaga + 4861 atgaaagtcg tagtattttt ttttaagacg cgtttctaac gcgtacagtc ctagtcgcac + 4921 aaacaaaata gggtacagac agccaaagag ttcgctttgc taagaatttt acgtgaaatg + 4981 gatagctata tgacaagtga aaacatccaa aagctaatat ctgatacctg gaactcccaa + 5041 acaggatcag attgattttg gaagcagagg ggtttaagaa gatttgaatt caaaagagat + 5101 cactatcctg aggtgcaatg cagacttaga ggcggtaggt ttcccacacg tgagactctg + 5161 acgatcactc catacccatt gaaaggggaa ctgatcactg agcctactct cattgaagaa + 5221 gccgaagtaa gcagtcttat agacagcgaa gattgactta tcaattatgc tatgtctatt + 5281 acggcaaacg taaaattgaa gcccgtatac caaatgctgg ttgatatacc ggtagatcat + 5341 cgcaatgtga tgattctgga taattactcc gcatggatta ttttggctgt tccgttcggg + 5401 acctgataat accaaagagg atactatgct gcttcaatac aaaaggaagc cttttcggca + 5461 tggatttgtg gatagcactt ttgaccactg ggcttttaga ttttggtttc caaaagtcga + 5521 agagcatgtc aaacctgagg aaggaatcgg acgtgttgat ttgtcagcgg ttatgtaact + 5581 tgacacaaaa atcacacttt accaccaaca gctccacgag ttttaacgac accgtcgatc + 5641 tgcgtgcacc atggctcgaa tcgccgtcaa ctctacctgt atcaacattt acaacagtat + 5701 gcgtctacaa ttcctatttc tccacttgaa acacagattt gtattcgagt tgtgaaattt + 5761 atttcaagaa taaggaaatc ttgaccgctg gagcagtacc tcatagctta gagggcgaaa + 5821 tcaagagatt taagattcaa tttatcaggg ttaataggag attaacttgg aggcaaaacc + 5881 cgaaacagaa tcatagtcca aggcatgacc gcgaccaaga aagaaaacca gttaatgaga + 5941 cctccagtag catccttgaa tcttcacatg ttctaaaagc accagttcat ctacacagag + 6001 ataggtttca atcgatttgc cttagctctc tcctagatcc aaaaataact gaaacaagaa + 6061 aactttccaa caagcaaccg attccaaaat attagactct gaaggcaatg gtgctagctc + 6121 aacgcggtgg aacaccctca tgttgaaatg gagtgtttcc ggcgctgtat tacacaagaa + 6181 gacctcgaag cgcagaacca tatcatggct aggatgtgcc tgaaagctgg taaacctaac + 6241 ctttcgggac taaagatcct gcgttctgtc acctactgtt ggtattgatt cataccacaa + 6301 caaatagctg aatgactaat ttgagccaaa gccaaccaac tccacgggtc atgtttgtac + 6361 tttttgtgct tatatggtac gttagttaaa ttgctacgta cgagtaggta tttctcagca + 6421 ggattttgac gctcgttacc ctcattacag gatacaaagt gtggaagtaa ttgctaatat + 6481 tagtgttgaa tcctgcatac gcaaagaagc ctttcctatt cgtccttatt cttcgtaccc + 6541 accaaagcca tggattgtct gaagtttgcc ctgacctagt caaaagcacc cgtactatac + 6601 ctgaggtgat taattgcata taacagggat cgatgaacat gctatcattt gacgttttat + 6661 ccggagtatg ttcaaaataa ggacttggtt taatttagta aaggttcagt gctcgatcat + 6721 ggggactttt gttggtatac atgcgccttg tattaatcgg cagacgagag gtgaaacagt + 6781 gtcaaatcgg agtggcagta attttatgcc tcagatacga gagaagcgac atggatcatg + 6841 ccgaatggag tttgctagtg aatagcataa tagtcccatg cgtatatctt ctaaaaagcc + 6901 gcggatcaga acgaattgaa ttcttgtcag ctgctaatgc cctgaaaaat gagacgaaca + 6961 tcaccgctgt ggaaggagga accaccacat gcgtgtttga ataaatcgag attcggctgc + 7021 tagttttaag ctggccccta tagttcaaat ccttccaagt tgtgaactct ttccgaatgt + 7081 ttggcattac caggaacgca ttgctaataa taggcaattt agagcaaaga atcttcaaca + 7141 attagaggag tacatgagga ccaactgcat agaggaattt ggataaccca tcaatattcg + 7201 tgtaaatatt ccggagctac atgatttgtc cacatctttt caactagcac agctgcttat + 7261 gagtcgttat cgcaaaccag aacacagcag gcagaaagtt ttactttgca agaatagtgc + 7321 cagcaagaaa catgaatggc tcttgctgcc gcgctataat actaacaaaa tacttttaga + 7381 gaatgtcaag aggtcaagat ccttctgatt gccaagctag ataagaaatc ctataacccc + 7441 ataggagtga taatagaaga atttgatctg cctactgaat gtgagatgag caatattaaa + 7501 gttaaaggaa gttaaaagcc gatgaattaa cagcgagtgt ggcataatgt ggaggataag + 7561 ctgagagtca agatacagag acagtcacgc agatgctttc caatttgaac caacatgact + 7621 tgttttgtga ctaactaaca ttcgcccccg gggtgctcaa gtgatatctt ctcaggtaat + 7681 aggataccgg tggactaaag attgagtggt tgttctcata tggagtacaa gaatcacaca + 7741 gatctcgagg accacagatc tcgcggctct tataagtttt ctttaaatgc agtaaattat + 7801 ttcgctttta taatcaggac agccaaagtg gtggacataa ttctgattac tgagatcgat + 7861 atgcctgtgc tgctacaagt gcaagcagta gctagagaag ttgcgtgatt gctgttcaga + 7921 attcgtattt tgtcctatgc attgctcata gaaccagcct tcaaaggtta gtattccagt + 7981 tatataaaca agcggaaatt gccaatttgg gaagggctaa cataaaagat ggtcaatagt + 8041 ttatcgattg tcgtcgaaag tgtcttcatt ttttcaactg ataaatgtaa aggctgccat + 8101 aatattacat gccatactgc aactgaattt tggtggaaga aatcaagatc ggagaaacct + 8161 tacaagctac agttgtctga gtttagcaca caatgccgta aaagtttctg atcacctatg + 8221 aatccataat gcagtaaaca aaaaaacaag agagtactga ccgcttgaaa tataaatgca + 8281 acttcaaatt ctccattgtc ttttagtggg ggcttacaga tcaaagttta atattttgct + 8341 attgtagatt gttcatatgt aatccttaaa atcttctagc gttatgttct gaatcttatc + 8401 ttcgtaaaac aaaggttcaa aataatttgt tttgtcaaag ccactgagac accagagatt + 8461 attttttata taggcatcat cctttgaaga ccttggccca cgcttcttat aagttgttcc + 8521 tgaagtgtgt cccttggtca gtctaaactt actaacaaga ttaatactca catttgaaac + 8581 aacagttgag tgtctaaaag agctagttga taatttaacg taggtgccca tcatgtgagg + 8641 acttgtgttg acaaacccag attttttctt caaagaagat aacggggcac atttgcttat + 8701 ccgcccagtc atagttctcg attgctcgag tactggtgct aagcttttaa ttgtcttgga + 8761 tctgacctta ggttgataat ggtaaagtgg ataatgctct tcgtgccaac tttcttcaag + 8821 aagggataag tacttgaaat atttttgaaa tggtgaagaa gaagttttcc aaatctaagc + 8881 atgttagtaa cttttagact ccgtgcagga gaggtgtttc aattacatac tatcgatatt + 8941 atcttagaaa cgtcatcatt ggcaatcgta tcgttgcagt tcgcaaggac tatcttattc + 9001 aaaatcattc ttgccactat gaactggttt ctaggacgag caacattcga atattgcttg + 9061 ctcgaagtag aaggtgaatc ttcgaatgtt aaggtaaact tctggccact agaaggcccc + 9121 ttaggaatag aaacaaatgg gagaatactt ttcttaattc gcaaatcaga gtcattgcca + 9181 gcactggcct tgaaatgtgc aatcttaaga ctttccatta ttagtaccgt acttatcttc + 9241 gacgagtata ttagcagata ttttaaagta acaagttaaa cataaaaaat ctcacttcta + 9301 ggatgtctgt tagtttttga ggcaacagtt tcgagtgtgg ttaaacaatg gtaggaaaaa + 9361 aatctaaaac cttgattacg ttatctttct ttgcgaacta gaactcctta actaaaatca + 9421 aaatttgtaa cttagatcac tatatcgtaa actccttgtg ggtcttttat ttgacacctt + 9481 aaatttacaa acctcttatc atagcccgct actcaatcaa tgtcgtactc aagtgatgac + 9541 tttgatgact tcttttcgca aaacagtctc gcacaggcta ggcaacaact tgcccttttg + 9601 ataagggatg tttcaaaatt ggctggaaat attgtccctc cttctagaaa cgaggttgat + 9661 gaagttagtg tcactgatcc ctttaataga tcaagaacat tacaagctgt tcctaaggcc + 9721 catagatctt atttggcgaa gctcttggat ggttttgaag aatctttaat tcgagtttta + 9781 gtatgtaaac tcccattgat ccaactaagc tttactaaca acttctcaag tctcttcagg + 9841 gcatgaacca gaaacttatc acaggtcagt atcaaaggct tttatttaac acattggcag + 9901 acaagtacgg ttctgaggtc ctagaactga ttgactacag tgttgaaaaa ccatattttc + 9961 ttagcaagtc ttacagggtt aagtcttcaa ctatttctgt gaacgaaaga agcgcaacag + 10021 aatctaactg ttcagacata tctccatctt cacattctcc tccggaagca tcatctatga + 10081 atacttctaa tgtctgttct gtttctgaag cagttatggc ctcaccagac agtaataaca + 10141 atattcaaca aaagaagcga agaagacata tttccaagga agctcgcagc cttttggaga + 10201 aagcatttga aactactaaa aatccaacca gaaaggaaag agcaataatc gcagagaaat + 10261 ccggtatgac agcacttcaa gtaagagtgt ggttcaccaa caagcgtatg agaaccaaga + 10321 ccagaatata agttcatgtt attgcctctg atttgtaggg cgcgtttcaa atgtaattca + 10381 tagccaaaca tcatgtcttt tgtgactctc actagccatc aatagcatct ccttaccatt + 10441 tcctactttg ccactgttat catcgattct gtttacctta atagcttaga acattattga + 10501 cttgggtttc atcatctgga aaattttgcc tatctctgaa tcatatcttg ataatagttt + 10561 acctgctggt gaaacactcg aagttatgac gagactagtg ggcgtttgat gtgacaggtt + 10621 aaactctcac ctttcttgtc tttaaatcca accattatat gtatcccaat gatatcgaag + 10681 tggagctagg ttaactatct tgcaaacacc aacaaacctt catctttcgt ctatcgtact + 10741 atgtatataa tgtttattaa atacaagata cttcgatctc gaagtatcca ttcatagata + 10801 ccattactcg ttcttgttag agacttttga tatggctcta agtatactta gtttagtaat + 10861 cttcgctagt ggcttacaat gtgacactct aaccatctgt tttcattggg cactaatctt + 10921 cgtaatgagc atctcgattg ggagacttct gaacttcatc tccaatattc ctttaacttt + 10981 tgttttaaga agctttgaac actatttatt atctttatct gtgtaccatt attgaattga + 11041 atggcctttg ctggaaatag taaacagcta cgttgttcgg tttccctctc ccccaaatag + 11101 ttttaagtta agcctgtaaa ctgcccttcc cgcccttcct atttgccaat cctcttacgt + 11161 ttactacttg taactttctc cgagtacaat cgaggcgcgc ccaagcttca agttcaagaa + 11221 caagccaatt tcacattatt aggtttttca actcttctca aattccttgc ggcttcctga + 11281 cagtttattt gggttgtttg aacgcagccc aggtgttctg atctctcttc agagttaaat + 11341 ttaaattaac acctatttcg ttcaaacggc tgtaccaagg ccgtattgta tagctgatta + 11401 acatgtagta attgtggaat ttggagctga ttgcgaataa tactgtagaa taagttctgt + 11461 ttttactgcg ccccgagcgg tacaggaact actaatgcac ccattaacat ctacatgacc + 11521 taatagttga tgctcctgtc cttactgctc gccggttgcc actcaaacaa acttctgtgc + 11581 cgcccggctt acagcataca gtcgtattta agaaagttct acatctcgtt cgaatcacag + 11641 aacgttcgac cagaatttga tttttggtgt cgttaaaaga acaggacgcc atcctttttg + 11701 agcagccatt gggtcataga gctgcatagg aaatagtttg acattctact cgttaagata + 11761 aacactagct ctgatgctgg gtccaggtat tctcacttcc gggaatatat gccctcggaa + 11821 gttgacccca aagaggtgat gagaattaca cgtggaattg acaatcagac taaaaactac + 11881 acacattaac tagcacctaa gggactgctc tcatcctcaa tggcttgtaa attctcagct + 11941 ggggatgaac caggcttttg caaggttata aaactgttat cgaagctgtg atgaatcctg + 12001 cgtcgaatct aattctggat ttgaaaactt atagaggtag tcaacaaatc ccattaaaca + 12061 ggtgaaaccc gaataaacca ttgagcttaa tatgatgtaa acaaactcac atattaagaa + 12121 tgaagccaaa tgtggaatgt tgtagctccc gtttccggcc ttaattcttg cccttgatgg + 12181 ttggaaatca ggtcgaagga agattggatg ttatgaagag gcagaaattc tccaacgccc + 12241 aagaagtaac gctaagaaga tctacagtgt ttcattgaag ctccgagaat aataaaggtg + 12301 gcgaatatga gatcatcaag aagatgtcga ttttaataaa gtccttctat tcaaagcttc + 12361 tcgtcaagat taatataacg ccagagaaag tgagtccttc ccagcgacaa ccacaaagta + 12421 tagaatcatt aattgtacgg taacaaacta tgagtgggga taggcaggat acaggcgtag + 12481 ttagcagaag gtgtagagtt atgatttcat aaggagaaga ctgcattgat atacggtgat + 12541 gttaagaaac gaatgtatca gatcaggtta ttaaaaaagc ggctatttta cggtcagact + 12601 tcaagagaga ttggatgatt agcatcaaac gtaacattcg taacatgcga tacaatgcaa + 12661 agcataggca gggcaagcta caggagcacc tcgagattat tgtgttttct atattttagt + 12721 cttcccaaat tgttataggg ggcagagcat taatatactt agagatactt gtgagcgtga + 12781 tgtgatagtc gttacgaata cgaaccaaca cgtttgaaat gttccgaatg gattgaagtt + 12841 aaagtgctgc tgctactgca agtttactac tattagcatc tgtcaaaatg gaacttgtaa + 12901 aatagacgtt ggaagaatgg acaaactaaa tgggtagcat tgaacaatat gtatggttat + 12961 tagtcgaaaa ctagagattc tattgatatt ttcaggatta tttccattaa gaattttttg + 13021 taaagcactg tttcgcgaac gcagaccttt ttgaggcgtg gcttaacgat taaccttccg + 13081 gcttgacgga cacgatctat tgaagagtgg tatgaaatta accagctgta tatacatata + 13141 ttcagttttt cacgttgaca aacaatgcct aggaaagaag tgaaagcaaa gtggacaagc + 13201 aacccgaaga agccatacag tgctggattt aaactcttct ctcttcctgg actgaaacat + 13261 cgcaataatg cccttgaaag taagaacccg tcaaagtgta cctccccttc gaattttcag + 13321 tgtcttactt ttgccgctac gtccctacca aagataccaa agctttcagc cgattatgaa + 13381 agatttattg aaggactaaa ggatcataaa gctggtcaag atagtagtac gtacatccgc + 13441 caacatttga ggagaaagag agggccctca agaaagcgga caaagttgaa tggttttatg + 13501 gcctatcgat ccttcttctc taggaacgtt gcaacagatc aacaaggagt cctatcttct + 13561 caattggcga aagaatggga gaggaatcca gaaatccaac ttgtatggaa gagatattcc + 13621 acagagtaca atttgtctgt tttgagtgat cgccttccct ttttcgattg gcttttgctt + 13681 gtaacatcag agcctacttg tatctctgaa aacatttatg acaacaagga tccaggtaca + 13741 ttctctagaa ttcaagatgt tttcaataca aatgaggcag atgagaacca ccagttttta + 13801 aagatgagtt ttgatgtatc tgtgatcgat ccaagaatag gacaagcatt cgagcattct + 13861 atatagttta tgctaaaccg ataattgaat cgaagcttat aacaattgaa ttactgttgt + 13921 attactttta tacattgact gatctattgt aaccaaacag ttagttcgag agttgataca + 13981 ggaacgtcaa tgtaggatga tgcaaatggg ttagcatcta gtaatgttct accaacgcca + 14041 tcgtctcctc agcctgtgaa cagtattatt agaaccttaa gctacaccta tccttgatga + 14101 aactcagtta atgtcacttc caaagtttga gtgcttcttt ataacagcag gaacggctcc + 14161 tcgctttccc taagtcgata agctatttcc ccactttgat tatctttttg aaacaaacag + 14221 ttacggcggt tattgttatt tttaatctga aacagaagct atcagttatg tgaaagaata + 14281 cgccatctat tacagttgaa gttgacctga acattataag gaatagggat aacctacatt + 14341 cttactatta agtattggaa aaacgcacct aagatcttag tttttctagc gattatatgt + 14401 gtatatatat tcgtttcttt agctgttgca tgatcagttg tttcatctct atcacgtgat + 14461 ttatgttcat gctgtcaagg gattttgagc agtcttgaaa caaactttct ctagctccct + 14521 gttattctat tactacaagt tcacttcctg cctccaaaca atgtctgaag atcagtttag + 14581 cagatgtcca ataacttcat tactctcaga cactgataat atacaacagg gggatactgc + 14641 agagtatgtt ctttttgaaa ctcttgcaat gcagatttgg tactaacaat taaataagtt + 14701 cacgctattt actatcctcg agctcgaaac atatcctaga aagctgctca cttattagct + 14761 ccattgatgt tggcacactt tcttcgaaca tcctagcctc acatatggta agttttactt + 14821 ctatgtcaag cgatcaaact aacacactaa ggagttggat ttacttcaga aaagacattc + 14881 aaatactaca gcagaggatc agtcacagtt tcaagaaatt caaaaagact tattgaaatc + 14941 tcagcttttg ctctccgaga aggccatctt agtcgaagcc cttgagcggt tttcaacttc + 15001 gacagaatct cctaacaatc ctgacccttt tagattcaat attattacgc agaagatgat + 15061 tagagaagat ggaagtatta tttctagaaa gaaaagatta gcaaggcaga aagttgccat + 15121 tcttgaggat tggtatgttt tctcgcacag taccctattc aaatttacaa ttaacatagt + 15181 ttaggtatta tagtcatccg gagaagccca acttgaatga atcaatgctt ctgtctttgg + 15241 tcaaaaagac aggtctcact aaaggccaaa ttcgcaattg gtatgtgtaa gattgtcaga + 15301 gatcatagca tgaactaact tctatactta ggatttccaa taagaggtat gtgtgcactt + 15361 caaagtttgt aatgaatcgg tacagtacta acaacattga tagaagaaag gaacgagagg + 15421 acaaaatagg ggattcaatt tcatgtctag tgtcgggact tgttaaaaac gattgtccct + 15481 aagcctatca ctccaatatg tgaacacttc tccttgcaca aattattagg aaattctgaa + 15541 attgttaaca ttgcatcaga acttttgaaa ccttcaggat ggcagcttga aagatacaag + 15601 ctttgagaat cactatttga tctatttcat ttgctttctc ccgactgtag ttttctgttg + 15661 ttacaaattt tgtccctttc atgaaagaat tcaactcaac caatcctttt tcagttatca + 15721 ctttcatgat attccactcc atgataggac gtggtgaatg tcttttaaca tataagcttt + 15781 gagtcttcat ttcagcttcc tgcaaaaatt ttaatggggt gacaccactt tctctaaact + 15841 tgcaacactg taattttgcc tgagcgacct ctacgcagtc tccatatact tcaatggagt + 15901 gagtgaacgc cacccgtggt tgaagaagtg atctcacata ctgaacgtat tttcctccat + 15961 tttttttcat gtcaggtact tcaaatatta cccttctcta agaccattag taatcgtagc + 16021 cttcgccaac tatatctctc ctcgtcatca acagtcaaat tcaacattct tgaatccagc + 16081 tcctttatag gaactctgta aaccatttat ctgcaagcaa aattaatctt ggtggcatct + 16141 gtcaaattcc cctaggttca ttgcctggat aaacagtgat tttaatctga ttcgttgtga + 16201 ttcttctcat ggaagagttt tcacctccaa actttccgag gtgggatgat ttttcgatca + 16261 agaagagatc agttactgat gctgagtgac attttattgc tggatttatc agattcccta + 16321 gccacttgtg tctggaatta atcaacggag ttcgttcact ttagagactc ttctggatag + 16381 tcctccaacc gccactgttg ctactcttct cgaattattg gtctagtaag tgttgttcaa + 16441 agactcgaca ttactggcga atatagaagg cgcccagaag tccacactca ataataagcg + 16501 ttagtgtcgg acctaacggt ctgacctaaa gtgcaatagt cttttttagc tgccgtatac + 16561 ctttgtggta ggatctatcc ctccccagtc ttcgaaagag tagagtacat atgtcttcct + 16621 caccaaggtc ctgagctatg cgttaaagga ttatgatatc cttagtagtg tttggcacat + 16681 gcaactcatc caaggacggt ccacatcgca tggtcgtact ggcaattgca ttaaaaccac + 16741 tcaagaaggg actctccctg cctggcgatt gaggttgtga tagcaacgtt aaaggacgcc + 16801 catccgtatc tatggaattt gtgcccataa cccagattcg ttttcactca ctaatttagc + 16861 cctaaatggt ggaacgaaga tgtgcaacat gaacattatc ctttttccgt tcagtcttat + 16921 aaaggcgaac ttgaatggct tgcttctgag caatcagtta attgaaacag atcttagatg + 16981 aatcttatca gcagtttcac attatttaaa attgcttaga cctaacctag atctaccacc + 17041 gagagtttta agtctcattt catcaggcac tttaaccccg atagactcac ctcgaaatta + 17101 gagctggttt atcaatgtag gcttctgact tatcacccga tctcagaata tatctaacag + 17161 gaaacatcgc cacacataat tgatacccta agtccattga tgcaaagtta taatctatcc + 17221 gacacccttc gaggtcattg gtttggtcgc tggttttgtg caataccact accatcacgg + 17281 ccaattgctg tttatcgatt cttaatcgaa ctctttatca tgacgcgtca tcttccatat + 17341 cgcagtctat ggcgccacct tttctgcaac gaggcacgct agttcggcta atctaagtcc + 17401 cagaatgctc cctccttcgt tttgccattg cttccaatca gagcattctt tctatgtgtg + 17461 tcatcagtat ctccaatatg ttcttccggt cagaagtaga ggtcaacgat aagtttttct + 17521 gaaataggtc agaaggtcag aggttctatt gcttactaat atgctggtca gaaacagaca + 17581 ttatcttcgg cggatgttgt gtatctgtga ttggaagtat gtttgtattt aaactggcaa + 17641 gtagaatttc actaatagaa gtgtctgctt aaactaggca gtttacagaa taaacaattt + 17701 tctttaccaa gcgcgttggt cggattctgt aaacgcgcga aaggaaccga cgccaagatc + 17761 tgcaatattt aaggtggaac gtccatcgag atacctgact atgaactgtt cgtgagtatc + 17821 ccgatcccag cttcctcacc agaaaactcc tggggctact tgagatttgg gccataagaa + 17881 tatttaatat ctttattctt gaactgttca tgcttcttct aggaactttc gaatagctca + 17941 tcaccatagt agaattctgg ggatctttac ttttggtgca gtcctctggt ttcccatgcc + 18001 acctctctgt tggagggcgc agtgacgaaa agggtaatca atattcagct cttgcagtat + 18061 tctgcagtac gtgggttgcc tcaaataagg tgcacgcgta gatgtgagac aattgcagta + 18121 ggtcaaatgg agctgatgcg gcatattgca tttgggctgt acttctttct ctcaaaaagt + 18181 atttgccaac gttgtacgga atcgaatcgg tcagatatcc ctttacagat tatcaaaaaa + 18241 caagatgcat caaccgctat attgtttttg acgcgtcttt taatactttg ctcaatggta + 18301 ggcagaatta cacaccgtgt atacctattg tgtcgtggcc atcattttca ttgtgaggaa + 18361 tctacctcat gggagttggc atttctgcga tcgttgtaat ttcatgtgac ccgttagttt + 18421 ccatcctcca cttttttggg gtcatgagta tctttaccgg ttatactcaa ataaacactc + 18481 aagtcttatt caggaaaaaa aaaaagactg tttgtttgct ccctgtgacg cacgaagcaa + 18541 gacacaggga ttgggtgact agaagaacgt attttctcaa caactcacac accatataca + 18601 ctttatcatt atccaagaaa gcaaaatagg cctttatcca tccaggtacg aaattagaat + 18661 agctttattt ccttttcatg tctgatttct atctatctct atagaataat agtcgtgggt + 18721 gtcatctttc ggggtaatct ccacatttcc caatggtctg tttatttgcg aaatcggaac + 18781 tatcgtaaat atcccagtgc ctcatttcag attgtcttta atgctgggca aacagttcaa + 18841 aattgcgtta aatgaaaata ttgactgtag acataaagga acaatccaag ttacacagcc + 18901 atctcagcat cgcatgattt caaaatcaaa gcacaaatca actcaaagtt tgaagccagt + 18961 tgcctctttt gctgacacga cactctcaat tgtatagccc gatatgttgt gatttcaacc + 19021 ccaatgatct tccagtttcg taatgtgatg gtttttttga acatttctcc atccatttgt + 19081 ggagcaggga aaatatatac cgcagcttgt ttagctcata ccttttcacc agaagggttc + 19141 aaaatgatcc aaatttttgt ttccaaaagt gaattattta agcttaaaga tgtgcactca + 19201 attgttcact atttgtgtgt tctgattagc caagcacata tcatccaatc tcagaggctt + 19261 tgcgcagtag ctcaaacaat tatacacaaa gacgattttg atcgacctac gactaaggag + 19321 aaatgaaaga aacaaggtgc gctagatgta tcaagacaca acaaacatta gggtacgaat + 19381 gttagagcga agtacagatc ccaaatttaa gcaacaaagt tgatgtctca atatcctcct + 19441 actcatccaa tttgatcaga aaaatattga accaatagca cagatgtctg catttgctag + 19501 ggctttatca tttcaacgtt gccctttgtg atatctctat atacgccaaa aacgataaga + 19561 catttacata tttgaagatt atttttgctc atatctttgg tcattagttt gtggatatct + 19621 tcaagagctc acttgctcta aatgcaatag atagcttttc agttcgtcta agaacaaatt + 19681 gaagatttcg acatttggaa agtgaacagt ctgtaactct ttatcaacta tgctgtcaat + 19741 actgggacca aatttgctga gccggctatg agctatacaa atctgaagca agatgaaaac + 19801 tcaacagaat cataacttta gaagttttta agtactggag agcgtgagga gcgacaagct + 19861 cctatagatg atattcttgt ttagctgcta tttgaaaagg ttgatctgaa tgtctcccgg + 19921 ttcacttcta acttagtgag aatttgaata aagagtaacc tcggattcta caaaatcagg + 19981 gagctttaga gcattttgca agctcatcac aatcttattt gcactctaaa agaacacact + 20041 ggaagcactc aaccgtgcgc aacctgtctg aaaccaaaaa aataggtgaa gttttattag + 20101 aatcacatga atcttatgac ctatatagcc taagccaatt agagttgaaa gaaaggttgc + 20161 atctaagtga agaaaaatcc tgcccactaa ccaaatctta tatttcaagt caactgaggg + 20221 gagcaaaaag tagctaacta cattttttgt ttccctttcg agaaagtaac agctcagcct + 20281 tgttctacat gaaggtcaat atcagcctct tatctcgaag aagaggaaag atctagatgt + 20341 agatgatgac gcgtgctatc catgccctcg tgaagaccac tcaagttcaa gattttgaaa + 20401 tctttttttg gcactccccg ccaatgaact caccaactca gaacatacgg aatttatata + 20461 tgaataaatg gaagtataca ttgcaatcat aaaatttcta aagtaggctc aaagtctgta + 20521 aagtgatagt tcgtgttata tataggtaga ttgatattga tcagaaataa tttatgcata + 20581 cgtttaaacc ccttcatctg tttaagctaa tagtcctttt ggtttccaga aagacatgca + 20641 tggtacagca tttctgtgga aatttggaat agcttattat gtgtaatcat tttatggtat + 20701 ctgaaccggt accctgcttt aagacttttt gctgatgctt ttattatgaa ctaactatgt + 20761 agcattccca aagccatcta atatccagta tccagtatcc agatggcatc catgttgagg + 20821 ttcggaggtt cgatccttgg gtgatcatag acattattga tagtgcgcag agacaatgct + 20881 tgacggcgag caccttgaag atgcatcgat tattgaaatt aaatgatggg attgtttctg + 20941 atgcgctttt tccgaaacat aaggtttaat tctaagtgaa ttagatgtaa acgcttatga + 21001 tacatgtatt cttcatgtaa ttttataagc acgtagacca taatttcctg aatagtaaat + 21061 taccctttta ggaaagcacc tgcatacctg gatactgagt ataacccagg ttattattat + 21121 ttcccttgag ggagtatctc tatatatact gagctttcga agagctccac ctaagccaca + 21181 tgtgattcta ctaacagtat caaattttga tacgttgttg acgaatcgca tacccatctc + 21241 aatttcaagc caatagaaaa atattccgtc ggattaaccg gatttcaaga attctaaaac + 21301 gcaatatgga aatgtaatct gattacatga ataagaaagc aagaaataag ccataccctc + 21361 ataagggaaa tgaagtttat atggtacctc ctataataag tatataaaga gattcttctc + 21421 ataatcgaat acactgtata aaatatgcat tagtaaaagt cttgaaccgc cagatacctc + 21481 cctgtcataa ccactactgt gcctcattga gtttaagtta tttcagattt ccatatagtg + 21541 cctaggagtg aagtaaatat tgcatttctg tgacactctg cacgtttgtt tgtacggtcg + 21601 gcataacgag tctatcttga taggcgttga agaactcact acatagcgtt ttttagaaaa + 21661 gcctggggct actatatgtg caaagcccat gatatggaaa ttttcgcaac tacggttgat + 21721 ttaattcatt caggttgggg aatatttgag gtagttttcg gattagttgt ttgagagctt + 21781 gttttgtttt tgttttgaca accaagaaca agctgctacc tgttcgtgaa tcatagccta + 21841 ttgaatttga tggatgcaag tgtcggttgt atgttcacca agaaactatt ttgtagaaag + 21901 ccggggttca tgggaaacac tcagttaagt cattctgtcg ttatcaatag tagtatcgat + 21961 attttcggtt aatggggtcc taatttctat ctaaaagata atgaagtcca ggattctgtt + 22021 agaacacagt ctcctgaaaa tccccgattt ggaaagtgaa agcaaacacg tcaaagctcc + 22081 ttctttacag tagacgaaac agccacaaat caagaaaggg gtgctatagt tgtgttttag + 22141 cggtccaagg ataatcatag ggtgcactat ctttgagtca gtgtccagag tgttttatcg + 22201 ctaactgtat tctgtatgtt ttcagtgacg ccacaacata agcaacaaaa gagagcttca + 22261 ttgttgagtt tactctgcat tgactaaata aaaaggagcc tccctcttat aacttcctca + 22321 gaactttcga gaagtacagc ttctcatgag ctatagtgtt taatgtaact tttcaatgta + 22381 atgaaggggt gctcgcactt aaactcctgc gaaactggaa gagttaccta ccaattgatc + 22441 atttatcgtt ttatattcat gtaatatagc tattacatgt gtaataagtt atttcattct + 22501 tcttcgctac tgtccccgtc tctgtagcca tactttctaa tttctcccaa tctttttctt + 22561 gctgcgatta gggcattctc caatttcaga atctcaactt gttgctccat ctccacagtt + 22621 ttgttttcat gatttgttag ttttgaataa tcaacatcat tctcaccact accgccgttg + 22681 cttctctgag ttaaaatgtc ttgtacttga ttaactagac ttctgcaggc agatgtgacg + 22741 ttcttggacg cagtttccaa attgtcttga gtcttagaca aaaacgtagc tttgactctc + 22801 gaagcagcta ccaactgaac agttgaagca gccacctcat gtgatgcgac aattaactgc + 22861 tcatgagatt tattcccaga cagaacacca tccgcagttt cgatcaaaat cttagtggaa + 22921 agggcaacag atttagctgc tgagataagg ccttctgtcc aacggttgtg ctttttgtag + 22981 tattcagtct tagaaattga gcctttgttc tttgcaacaa tttcctcttg tgaagcaata + 23041 gctgctttaa tcaaaagttc aatggaattg gtaacggcaa tcgcagcgga aacaatagct + 23101 ttgttaatct caaagtcgat ttgtgagata gatgggtctt gatctttcga gagtagcgaa + 23161 gtaagctggg atgatgcctt tgaaatggag gcggccgcat tctgcaattc agtttccaca + 23221 aggtcgccca agttcgcaac gttgctgttc aaaagattag atcttggggc taagtcctca + 23281 gtcaattggg taagatcttg aagtttctct tgcactgcca aatttccggc catgaccaca + 23341 tcagtcttct cttccacttc gccctctaaa ctatcggaaa gcaaagattt gaagaattct + 23401 tccgattcct ctgcagtagc tctcgcagta gctatgaatt gatcagcctc tgcatctgat + 23461 ttaacaaggc gcacaatacc cttagagttt aataaaacgt cagcaatgga agaagtgaag + 23521 tcattgagag aacggataat ctcagcgtga tctccatttg gcccatcaat gatgaagtca + 23581 ttaaaagagt caccgaagtc catagcagag gatgacgctt tctcgataat ggagagtaaa + 23641 tattcaggcg atgagttctg gttaccagct tgcataggag agtccaattc atataaggcg + 23701 tcttgtaatc tcttgaggcc actgagcaag atagcatcaa ccaaggaagt aagcttcgtt + 23761 aagtgatcaa ccaaaacttg gtcgatctgc tcttcaatag ctgtttcatt ctccttctga + 23821 gctttggcta attccaccag cgcatcgtcc attgtttgtt ggagaatttc taactcttca + 23881 tccttatcct ttagtaattg ttccaattct ggattgaaag ccgaagattg ctgtcttaac + 23941 tggttctcca aagcttcgat ctctttcttg tgttgagcaa aaatagtgga taggttcgat + 24001 gattggtttc tctcggcatc atctaatttc aaggtgagat ctctaatttg caactcaagc + 24061 ttgtcaatct catcaccttt accaccctta actttctcca agtccaaacg agcacggtca + 24121 cgttcacgga ttagaccagc caattccacg ttcttcgatt tcaggtcctt ttccaatttc + 24181 tcacgcttgt caatggcttc ttgagcagat gcggcttttt gttggagttt cttgaactta + 24241 tttagcaagt tcaagtgttc ctgtctcaat tgagagtaga gcttagctaa actctcatac + 24301 ttgttcttcc atagagttat ttgctcatgc aagttttgaa tcaactcatc cttggagcca + 24361 atttgctgag tagctgattg agtggtagct gtaatttcag tctccaaggc cttgacacgc + 24421 tgatcatatt gctgtagtag aagttggtct tgctcatatt gtcctctcaa agccagcaga + 24481 tcgcgctcta actcagctac gcggccctgg gcttgtgact ggtactgctc gcgaagcaat + 24541 tgctcctgtg caatacgctg ctgttcttgc tgttggacct gctgctgttc gaacaaaatt + 24601 ctttgttgtt cagcatactg ttgttgttgg agagcttgtg catcacgctc ttgttgcaaa + 24661 cgaatttgct cagcctcaaa actagattgc tgattgctcc aaaaatcgac accagttggt + 24721 tgtgcagcaa ttggttgctg gaactgggag acagttggct gttcagaaat tggttctgac + 24781 aaatttgtct gacgagattc tggtcttgga gtctcctctt cgacggatga ttcatcctta + 24841 accatgaggt taggagctgt ctctggtaat ctaggaattg tgatcaaaga agtcaagtag + 24901 cgaatggagg agcaatcagc ataaaattcg aacaaacgag catgttgcga ctcgtagcgc + 24961 tgcttcaatg gctctaaagc atcatcagat cctgtggaac ggtaaattgc cctcaacatc + 25021 gaggtgatga acttatagat tccataagat tcagtaacaa gagggaccaa tgctgaaatt + 25081 ttgcattcag atctcttatc atgtgaaatt gttgcgaaaa taagtctctg cagatcgtca + 25141 agtgagtctt gaagggacat caaatccatg atggcttcat aaccttcatc tgggttttgg + 25201 acagtcacca acgagatata ctcttcgtac tcaaaggttc cattgaaacc acggtgattc + 25261 cgatgaaact gaagctttct gatcaagtag gtgacatatt ctttaatcaa tctaccatag + 25321 cccttgaatc catcaccttg tatagatctc cctaaaccat cgatccagtt caagttcctg + 25381 taaccttctg cgagagcaga ttggtgacct tcttgaagaa ctttgtggat ggtgattaga + 25441 gccttaaata actgaacttc atcattctga ataggcaaaa tctttaaagc gttccagaac + 25501 gagagtgacg acttgtgatc ccaggtgtaa acaatacacg ctctcacatg ctttcttttt + 25561 ggggcagtct catcagcaga cgtagcctta cgaagggcag tctggagatc agactcagag + 25621 atcgtcttgg acat +// diff --git a/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/locus.gff3 b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/locus.gff3 new file mode 100644 index 00000000..7bc9369e --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/locus.gff3 @@ -0,0 +1,8 @@ +##gff-version 3 +##sequence-region JAMAIE010000005.1 605238 630871 +JAMAIE010000005.1 MATPredict gene 605238 606188 . - . ID=36038_pb4207_MATbz_MATa-MATalpha.gene0;Name=dic1;role=flanking_conserved +JAMAIE010000005.1 MATPredict gene 613590 614455 . - . ID=36038_pb4207_MATbz_MATa-MATalpha.gene1;Name=MATa2;role=core_MAT +JAMAIE010000005.1 MATPredict gene 615080 615568 . + . ID=36038_pb4207_MATbz_MATa-MATalpha.gene2;Name=MATa1;role=core_MAT +JAMAIE010000005.1 MATPredict gene 618402 619103 . + . ID=36038_pb4207_MATbz_MATa-MATalpha.gene3;Name=MATalpha1;role=core_MAT +JAMAIE010000005.1 MATPredict gene 620080 620421 . + . ID=36038_pb4207_MATbz_MATa-MATalpha.gene4;Name=MATalpha2;role=core_MAT +JAMAIE010000005.1 MATPredict gene 627731 630871 . - . ID=36038_pb4207_MATbz_MATa-MATalpha.gene5;Name=sla2;role=flanking_conserved diff --git a/db/candidates/Ascomycota/36038_pb4207_MATbz_MATa-MATalpha/metadata.yaml b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/metadata.yaml similarity index 99% rename from db/candidates/Ascomycota/36038_pb4207_MATbz_MATa-MATalpha/metadata.yaml rename to db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/metadata.yaml index 9257cd65..a9a6b352 100644 --- a/db/candidates/Ascomycota/36038_pb4207_MATbz_MATa-MATalpha/metadata.yaml +++ b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/metadata.yaml @@ -174,7 +174,7 @@ evidence: a1 (104 vs 23 bits); MATa2 scores 81-82 bits on the a2 profiles' citations: *id001 validation: - status: needs_review + status: accepted rejection_reason: null accession_resolved: false accession_resolved_date: null diff --git a/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/proteins.faa b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/proteins.faa new file mode 100644 index 00000000..999d864a --- /dev/null +++ b/db/Ascomycota/Phaffomycetales/36038_pb4207_MATbz_MATa-MATalpha/proteins.faa @@ -0,0 +1,12 @@ +>36038_pb4207_MATbz_MATa-MATalpha|gene_index=0|name=dic1|role=flanking_conserved +MSSVTATTHSTATGAPIALQPAASANAKTITATKTPTTKWPFWYGGFGGAVACFCTHPLDLAKVRLQTAPLPKPSLFQMAFSILKADGITGIYSGLSAGLLRQATYSLTRFGAYEYLKESFVPADKMSSMAYLLPISMVSGAVGGIVGNPSDIVNIRMQNDTGLPIEQRRNYKNAFDGVARIVTEEGPSALFRGLSTNLVRGVLMTSSQVVTYDLAKEMLISFGMKKESFFTFFSSSLLAGLAATTICSPADVLKTRIMNASGTNHSVVHILTKALKDEGPSFMFRGWVPSFVRLGPNTIIIFLVVEELKRMRIGL +>36038_pb4207_MATbz_MATa-MATalpha|gene_index=1|name=MATa2|role=core_MAT +MESLKIAHFKASAGNDSDLRIKKSILPFVSIPKGPSSGQKFTLTFEDSPSTSSKQYSNVARPRNQFIVARMILNKIVLANCNDTIANDDVSKIISIIWKTSSSPFQKYFKYLSLLEESWHEEHYPLYHYQPKVRSKTIKSLAPVLEQSRTMTGRISKCAPLSSLKKKSGFVNTSPHMMGTYVKLSTSSFRHSTVVSNVSINLVSKFRLTKGHTSGTTYKKRGPRSSKDDAYIKNNLWCLSGFDKTNYFEPLFYEDKIQNITLEDFKDYI +>36038_pb4207_MATbz_MATa-MATalpha|gene_index=2|name=MATa1|role=core_MAT +MNQKLITGQYQRLLFNTLADKYGSEVLELIDYSVEKPYFLSKSYRVKSSTISVNERSATESNCSDISPSSHSPPEASSMNTSNVCSVSEAVMASPDSNNNIQQKKRRRHISKEARSLLEKAFETTKNPTRKERAIIAEKSGMTALQVRVWFTNKRMRTKTRI +>36038_pb4207_MATbz_MATa-MATalpha|gene_index=3|name=MATalpha1|role=core_MAT +MPRKEVKAKWTSNPKKPYSAGFKLFSLPGLKHRNNALESKNPSKCTSPSNFQCLTFAATSLPKIPKLSADYERFIEGLKDHKAGQDSSTYIRQHLRRKRGPSRKRTKLNGFMAYRSFFSRNVATDQQGVLSSQLAKEWERNPEIQLVWKRYSTEYNLSVLSDRLPFFDWLLLVTSEPTCISENIYDNKDPGTFSRIQDVFNTNEADENHQFLKMSFDVSVIDPRIGQAFEHSI +>36038_pb4207_MATbz_MATa-MATalpha|gene_index=4|name=MATalpha2|role=core_MAT +HTKELDLLQKRHSNTTAEDQSQFQEIQKDLLKSQLLLSEKAILVEALERFSTSTESPNNPDPFRFNIITQKMIREDGSIISRKKRLARQKVAILEDWYVFSHSTLFKFTINIV +>36038_pb4207_MATbz_MATa-MATalpha|gene_index=5|name=sla2|role=flanking_conserved +MSKTISESDLQTALRKATSADETAPKRKHVRACIVYTWDHKSSLSFWNALKILPIQNDEVQLFKALITIHKVLQEGHQSALAEGYRNLNWIDGLGRSIQGDGFKGYGRLIKEYVTYLIRKLQFHRNHRGFNGTFEYEEYISLVTVQNPDEGYEAIMDLMSLQDSLDDLQRLIFATISHDKRSECKISALVPLVTESYGIYKFITSMLRAIYRSTGSDDALEPLKQRYESQHARLFEFYADCSSIRYLTSLITIPRLPETAPNLMVKDESSVEEETPRPESRQTNLSEPISEQPTVSQFQQPIAAQPTGVDFWSNQQSSFEAEQIRLQQERDAQALQQQQYAEQQRILFEQQQVQQQEQQRIAQEQLLREQYQSQAQGRVAELERDLLALRGQYEQDQLLLQQYDQRVKALETEITATTQSATQQIGSKDELIQNLHEQITLWKNKYESLAKLYSQLRQEHLNLLNKFKKLQQKAASAQEAIDKREKLEKDLKSKNVELAGLIRERDRARLDLEKVKGGKGDEIDKLELQIRDLTLKLDDAERNQSSNLSTIFAQHKKEIEALENQLRQQSSAFNPELEQLLKDKDEELEILQQTMDDALVELAKAQKENETAIEEQIDQVLVDHLTKLTSLVDAILLSGLKRLQDALYELDSPMQAGNQNSSPEYLLSIIEKASSSAMDFGDSFNDFIIDGPNGDHAEIIRSLNDFTSSIADVLLNSKGIVRLVKSDAEADQFIATARATAEESEEFFKSLLSDSLEGEVEEKTDVVMAGNLAVQEKLQDLTQLTEDLAPRSNLLNSNVANLGDLVETELQNAAASISKASSQLTSLLSKDQDPSISQIDFEINKAIVSAAIAVTNSIELLIKAAIASQEEIVAKNKGSISKTEYYKKHNRWTEGLISAAKSVALSTKILIETADGVLSGNKSHEQLIVASHEVAASTVQLVAASRVKATFLSKTQDNLETASKNVTSACRSLVNQVQDILTQRSNGGSGENDVDYSKLTNHENKTVEMEQQVEILKLENALIAARKRLGEIRKYGYRDGDSSEEE diff --git a/tests/detect/test_matss_family.py b/tests/detect/test_matss_family.py index 7f025c11..9cd008b5 100644 --- a/tests/detect/test_matss_family.py +++ b/tests/detect/test_matss_family.py @@ -22,13 +22,14 @@ def test_matss_declaration(): assert set(genes) == {"MATa1", "MATa2", "MATalpha1", "MATalpha2", "sla2", "dic1"} -def test_matss_candidates_are_tier_3_models_with_table_12(): +def test_matss_records_are_accepted_tier_3_models_with_table_12(): for rid in ("44080_gdd12_MATss_MATa-MATalpha", "44080_gdd12_MATss_MATa"): - rec = yaml.safe_load((DB / "candidates" / "Ascomycota" / rid / "metadata.yaml").read_text()) + rec = yaml.safe_load((DB / "Ascomycota" / "Ascoideales" / rid / "metadata.yaml").read_text()) assert rec["mating_type"]["locus_name"] == "MATss" and rec["mating_type"]["system"] == "homothallic" assert rec["evidence"]["boundaries"]["tier"] == 3 assert all(g["transl_table"] == 12 for g in rec["genes"]) - assert rec["validation"]["status"] == "needs_review" + assert rec["validation"]["status"] == "accepted" + assert (DB / "Ascomycota" / "Ascoideales" / rid / "proteins.faa").stat().st_size > 0 def test_matss_routes_the_species_only(): @@ -42,3 +43,14 @@ def test_matss_routes_the_species_only(): d = route(4909, fams, lineage_taxids_resolver=lambda t: [131567, 2759, 33154, 4751, 451864, 4890, 716545, 147537, 4909], phylum_name_resolver=lambda t: "Ascomycota") assert "MATss" not in {f.key.locus_name for f in d.families} + + +def test_matbz_and_matpf_records_are_accepted_tier_3_models(): + ids = {"Phaffomycetales": ["36038_pb4207_MATbz_MATa-MATalpha", "36022_joy008_MATpf_MATa", "36022_tbrc-4498_MATpf_MATalpha"]} + for order, rids in ids.items(): + for rid in rids: + rec = yaml.safe_load((DB / "Ascomycota" / order / rid / "metadata.yaml").read_text()) + assert rec["mating_type"]["locus_name"] in ("MATbz", "MATpf") + assert rec["evidence"]["boundaries"]["tier"] == 3 + assert rec["validation"]["status"] == "accepted" + assert (DB / "Ascomycota" / order / rid / "proteins.faa").stat().st_size > 0